Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0183 ATGGGTTGGCTTAGCAGAATATTTAAAGGCTCCGACTCCGACCATAAGATTTCGGAAGGGCATTACTATAAAGAGGATGCGGATTATTATTTGCCATCGACTTCAGGGCAGGATGTTTGGACCCAGAACGAGAATGATGAAGATATTGATCGTGCTATTGCACTGTCTCTGGTGGAAGAGAGTCGGAAAGCAAACAATGTAAATGATTACAGATCACAATTAGAAGAAGACGAGCAACTTGCCAGAGCTATAGAAGAAAGTCTAAATTTGGAGTCGCCTCCCAGATATGGAAATGAAAATATGTATCAACCAATTCAGTATTTCCCCATGGGGTCCAGGATTTGTGCTGGCTGCTATACTGAGATTGGTTATGGACGATATCTAAATTGCTTGAATGCATTCTGGCATCCTGAATGCTTCCGCTGCCGTGCTTGCAACCTACCAATCTCTGATTGTGAGtTCTCCACATCTGGGAATTACCCTTACCATAAATCATGCTATAAAGAAAGCTACCATCCAAAATGTGATGTCTGCAAGCACTTTATTCCAACAAATCCTGCTGGTCTAATTGAATATAGGGCACATCCATTCTGGATCCAGAAATATTGCCCTTCTCATGAACATGATGGTACTCCACGCTGTTGCAGCTGTGAGCGAATGGAGTCACAAGAGACAGGATATATTGCTCTTAAGGATGGCCGGAAGCTCTGCTTAGAGTGTCTGGATTCTGCTATCATGGATACTAATGAATGCCAACCCCTTTATGCTGATATACAAAGATTTTATGAAAGCCTAAATATGAAACTGGACCAGCAAATTCCACTACTCTTGGTTGAAAGACAAGCACTGAATGAAgcaagagagggagagaagaatGGCCACTATCACATGCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACTATCTCGAGACGACCTAGAGTTGGGACAGGACATGGAGTAATGGACATGAGAGCACTGCCACACAGACTGACTCCACGCTGCGATGTGACTGCAATTCTCATTTTAAATGGTCTTCCTAGGTTGCTTACTGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTGCGGCTTAAAGGTTATCGGACTCTAAGTCAAGATGTTGAAGAAGGTATCTGTCAGGTTTTGGCTCATATGTGGTTGGAGTCTGAGCTTGCTTCTGCATCAGGCAGCAATTTTGTATCAGCCTCATCCTCATCTGCATCACATACATCTAGAAAAGGTAAAAGACCTCAGTTTGAGAGGAAGCTTGGGGAGTTCTTCAAGCACCAGATTGAATCAGACATTTCCCCTGTTTATGGAGATGGGTTTAGGGCAGGTCAAAAAGCAGTGCGTAAGTATGGTCTACAAAGGACCCTTCACCATATCAGGATGATGGGGAGTTTTCCATATTAA 1428 0.4321 MGWLSRIFKGSDSDHKISEGHYYKEDADYYLPSTSGQDVWTQNENDEDIDRAIALSLVEESRKANNVNDYRSQLEEDEQLARAIEESLNLESPPRYGNENMYQPIQYFPMGSRICAGCYTEIGYGRYLNCLNAFWHPECFRCRACNLPISDCEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWIQKYCPSHEHDGTPRCCSCERMESQETGYIALKDGRKLCLECLDSAIMDTNECQPLYADIQRFYESLNMKLDQQIPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEELSTISRRPRVGTGHGVMDMRALPHRLTPRCDVTAILILNGLPRLLTGSILAHEMMHAWLRLKGYRTLSQDVEEGICQVLAHMWLESELASASGSNFVSASSSSASHTSRKGKRPQFERKLGEFFKHQIESDISPVYGDGFRAGQKAVRKYGLQRTLHHIRMMGSFPY 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0183 475 SMART lim_4 114 166 IPR001781 -
Ssu5g0183 475 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 75 94 IPR003903 -
Ssu5g0183 475 SMART uim 75 94 IPR003903 -
Ssu5g0183 475 SMART uim 44 63 IPR003903 -
Ssu5g0183 475 PANTHER PROTEIN DA1-RELATED 2 1 475 IPR045218 -
Ssu5g0183 475 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 141 195 - -
Ssu5g0183 475 PANTHER PROTEIN DA1-LIKE 1 475 - -
Ssu5g0183 475 Coils Coil 67 87 - -
Ssu5g0183 475 CDD LIM_DA1 115 167 - -
Ssu5g0183 475 Pfam Protein DA1 265 469 IPR022087 -
Ssu5g0183 475 Pfam LIM domain 115 169 IPR001781 -
Ssu5g0183 475 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 44 63 IPR003903 -
Ssu5g0183 475 ProSiteProfiles LIM domain profile. 113 173 IPR001781 -
Ssu5g0183 475 Gene3D Cysteine Rich Protein 109 171 - -
Ssu5g0183 475 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 108 140 - -
Ssu5g0183 475 ProSitePatterns LIM zinc-binding domain signature. 115 149 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0183 Ssu-Chr5 3640730 3647203 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu5g0183 DA1-like 1.9e-94 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0183 5 3640730 3647203 Ssu5g0183 5 3640730 3647203 ECH