LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g0182	ATGAGTCATGTTGTGTTTCTCTTCACActaacttttcttctttctttaaatGCCAAAGCACAGCAGAATTACTCTGGGGATTCAACATTCAAGTGCAATAACGATGACAAAATGGGTCCTTCACCTTCCTTCCTTTACACCTGCAATGGCCTCAACAAATCCTGCATGGCCTTCCTCATCTTCAAATCCAAACCTCCTTTCAACTCCATACCCACAATTTCCAACCTCACTTCATCAAACCCAGAAGAGCTTGCAAGAATCAATGATGCCACAGTGCTCTCAGGGTTCCCTATTGGTAAAGAGGTGATTGTCCCTGTGAACTGTTCTTGTTTAACTAGGCACTATTACCAAGctgaaaccaaatatatattGGGGCCAGATTCAACATATTTCACAGTGGCAAATGATGCCTTTCAGGGTTTGGTCACTTGTGATTCTCTCAAGCGTGCTAATCCATATGGGGAATTTGATTTGCAGCCTGGAATGGAATTGCATGTGCCACTCAGATGCGCTTGTCCAACATGGCATCAGACTAGAAGTGGCACCAAGTATTTACTAACGTATTCACTGAACTTGGGTGATAACATTGCAAATATTGCTACAAGGTTCAATGTAGCAGCAGGTAATGTGGTTGATGCCAATGGTTTTTCCACACAAACACAAGCTATTTATCCAGTCACAACTATTTTGATTCCTTTGTCAAGTGAACCGGTGAGTTCAATGACCACAGTTGTTAGTGATCCACCAACCATGTCACCTCTTCCTGTTTGCAGCTCCAAAAAGTGCAagtcaaagagaaaactctACACTGCTATTGCCACCACGGGGGGTTTCATGCTGGTTCTATGTGTTGTCTTATATGGGGTTTTTCTGTTCAGAAGGAGATCAGCAAGGTTCATTAAGAGAGGAGAAGAAGGTGAGAAAACAAAGAAGTTGTCTTCAGAATACATCCGCGGGGAGATAGCAATCATTGAACATCACTCCATAGTGTACAAGTTTGAGGAAATAAAGGAGGCCactgaaaattttagtttaaagaaTAGAATTAAAGGTTCTGTGTTTCGTGGGGCATTTGGTAATGGCAGGAACATATTGGCTGTCAAAAAGATGAGAGGAGATGCGGCCAAGGAAGTGAATTTGCTGAAAAGGATCAATCACTTCAACCTGATAAAGCTGCAAGGTTACTGTGAAAGCGATGGTTGCCTCTATCTTGTTTATGAATATATGGAAAATGGCTCTCTGAGAGAATGGCTTAGCAAGAACAGTGGAAACATAAACAGTGGCTTAGCAAAGAGGATCCAGATTGCTCTGGATATTGCCAATGGTCTTCAGTATCTTCACAACTTCACAGAACCTTGCTATGTGCACAGGAACATAAACAGTGGAAGCATTCTACTAAACAAAGATCTAAGGGCCAAGATAGCAAATTTTGCTCTTGCTGAAGAATCAGAAAGTAAAATAACTTCCAGTTGCGCCTCATCACATGTCGCGATATCGAGGGGTTATATGGCTCCAGAGTATCTGGAGGCAGGGATGGTCACTACCAAAATGGATGTTTATGCCTTCGGAGTGGTGCTGTTGGAATTGATCACGGGTAAAGATTCTGTTACCCTTCAAGATGGAAGAGAAGTAATGCTTCATGCAATCATAGTAAATCTCATTGGTAAAGAGAATGAAGCAGATAAGGTGAGTTTGTTCATTGATCCTAGCCTCGCCGGAAACAGTGAGAAAGTATTTGCTCTCCAGCTAGTTAAACTAGGTCTAGCCTGCTTGATCCAAGAGCCAGCAGAGAGACCAACCATGGTAGAGGCAGTCTCTAgcttattgaaaatatatgcaGGTTACATGGACCAAAGAATACCAACTAGCATCAACGACAATCTCGGCATGGGGAGGTGA	1899	0.4086	MSHVVFLFTLTFLLSLNAKAQQNYSGDSTFKCNNDDKMGPSPSFLYTCNGLNKSCMAFLIFKSKPPFNSIPTISNLTSSNPEELARINDATVLSGFPIGKEVIVPVNCSCLTRHYYQAETKYILGPDSTYFTVANDAFQGLVTCDSLKRANPYGEFDLQPGMELHVPLRCACPTWHQTRSGTKYLLTYSLNLGDNIANIATRFNVAAGNVVDANGFSTQTQAIYPVTTILIPLSSEPVSSMTTVVSDPPTMSPLPVCSSKKCKSKRKLYTAIATTGGFMLVLCVVLYGVFLFRRRSARFIKRGEEGEKTKKLSSEYIRGEIAIIEHHSIVYKFEEIKEATENFSLKNRIKGSVFRGAFGNGRNILAVKKMRGDAAKEVNLLKRINHFNLIKLQGYCESDGCLYLVYEYMENGSLREWLSKNSGNINSGLAKRIQIALDIANGLQYLHNFTEPCYVHRNINSGSILLNKDLRAKIANFALAEESESKITSSCASSHVAISRGYMAPEYLEAGMVTTKMDVYAFGVVLLELITGKDSVTLQDGREVMLHAIIVNLIGKENEADKVSLFIDPSLAGNSEKVFALQLVKLGLACLIQEPAERPTMVEAVSSLLKIYAGYMDQRIPTSINDNLGMGR	632

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g0182	632	Pfam	LysM domain	193	232	IPR018392	-
	Ssu5g0182	632	Pfam	Protein tyrosine and serine/threonine kinase	371	606	IPR001245	GO:0004672\|GO:0006468
	Ssu5g0182	632	Gene3D	Transferase(Phosphotransferase) domain 1	409	623	-	-
	Ssu5g0182	632	Gene3D	Phosphorylase Kinase; domain 1	304	408	-	-
	Ssu5g0182	632	PANTHER	LYSM-DOMAIN RECEPTOR-LIKE KINASE	4	617	-	-
	Ssu5g0182	632	ProSiteProfiles	LysM domain profile.	186	231	IPR018392	-
	Ssu5g0182	632	SUPERFAMILY	Protein kinase-like (PK-like)	325	608	IPR011009	-
	Ssu5g0182	632	PANTHER	LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED	4	617	-	-
	Ssu5g0182	632	ProSiteProfiles	Protein kinase domain profile.	294	613	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g0182	Ssu-Chr5	3638260	3640158	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Ssu5g0182		PK_Tyr_Ser-Thr	2e-35	CL0016