Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0178 ATGGAAGTTTGCGGGCCAGTCAAATCTGAAAGTAGATTAAAGCACCGCCCCTTGACCCCTATTAGGTTGTTAAGAGGTCTGATATGTTTAGTGGTGTTTCTTTCTACAGCTTTTATGTGTTTAGTCTATTTTGCGCCGGTGGCAGTTGTAGGATTGCGGCTTTTCAGCATACGTTGTAGTAGGAAGACAGTGTCATTCATGTTTGGACTTTGGCTAGCTATGTGGCCGTCTCTATTCGAAAAGATAAACAAAACTAAAGTTGTCTTTTCTGGGGATAGTATTCCAATGAAGGAACGTGTTTTACTTATTGCAAATCACAGAACTGAGGTTGATTGGATGTACTTGTGGGATCTTGCACTTCGAAAGGGAAGACTGGGATGCATAAAATACATCCTTAAGAGCAGCTTGATGAAGCTACCTATCTTTGGTTGGGGATTTCACATTCTGGAATTCATTGCAGTGGAGAGGAAGTGGGAGATAGATGAGCAAATATTGCACCAAAAGCTTTCAACCTTTAAGGATCCTCAAGATCCTTTGTGGCTGGCTCTTTTTCCTGAAGGAACCGATTACACCGATCAGAAGAGTAAAAATAGTCAGAAATTTGCTGCTGAAGCTGGGCTCCCTGTGCTGACAAATGTATTACTTCCGAAAACAAAGGGGTTTCATGCTTGCTTGGAAGCTCTACGAAGCTCATTGGATGCAGTATACGATGTGACAATTGCATACAAGAATCAGTGTCCTTCCTTTGTGGACAATGTTTTTGGTGTTGACCCTTCAGAAGTGCACCTGCACATTCGGCGTATTCCTGTGGAGGAGATTCCGGCTTCTGAAACCAAAGCTGCTTCTTGGTTAATCAATGCATTCCAGACCAAGGACCAACTGCTTTCAGATTTCAAGATTCAAGGCCATTTCCCTAACCaactaaatgaaaatgaaatttctacatTTAAGAGCCTACTTACTTTTATCGTGGTAGTTTCTTTTACTgccatgtttatttattttacattttttctatcatttggTTCAAACTGTATGTAG 1041 0.3948 MEVCGPVKSESRLKHRPLTPIRLLRGLICLVVFLSTAFMCLVYFAPVAVVGLRLFSIRCSRKTVSFMFGLWLAMWPSLFEKINKTKVVFSGDSIPMKERVLLIANHRTEVDWMYLWDLALRKGRLGCIKYILKSSLMKLPIFGWGFHILEFIAVERKWEIDEQILHQKLSTFKDPQDPLWLALFPEGTDYTDQKSKNSQKFAAEAGLPVLTNVLLPKTKGFHACLEALRSSLDAVYDVTIAYKNQCPSFVDNVFGVDPSEVHLHIRRIPVEEIPASETKAASWLINAFQTKDQLLSDFKIQGHFPNQLNENEISTFKSLLTFIVVVSFTAMFIYFTFFLSFGSNCM 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0178 346 Pfam Acyltransferase C-terminus 254 324 IPR032098 -
Ssu5g0178 346 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 36 240 - -
Ssu5g0178 346 CDD LPLAT_LCLAT1-like 78 266 - -
Ssu5g0178 346 PANTHER 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED 1 341 - -
Ssu5g0178 346 Pfam Acyltransferase 89 243 IPR002123 GO:0016746
Ssu5g0178 346 PANTHER 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 5-RELATED 1 341 - -
Ssu5g0178 346 SMART plsc_2 100 214 IPR002123 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0178 Ssu-Chr5 3570052 3572134 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0178 5 3570052 3572134 Ssu5g0178 5 3570052 3572134 ECH