Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0177 ATGGCCCTAAACCCCAACTCGAAAACCTCTGCACTCTTCCACCTGCTCCTCTTCTTATTTGGTAATGTAGCATCTGCCACAGTGTTTACCCTCGAGAACCATTGCAGTCACACAGTTTGGCCCGGTACGCTTTCCGGCAACGGCGCCGCCATTCTCGGCGACGGCGGTTTTCCCCTGGCTCCCGGGTCGTCGGTTCACCTCACCGCGCCGGCCGGCTGGTCTGGCCGCTTCTGGGCCCGGACGGGGTGCAGCTTCGACGGCTCCGGCAACGGAAAATGCGACACCGGCGACTGCGCCGGAGGACTGAGGTGCACTGGAGGAGGGGTCCCGCCGGTGACGCTGGCGGAGTTCACCATCGGAACCGGAAGTAACGGCAACAAGGACTTTTATGACGTGAGCCTCGTGGACGGTTACAACGTGGGAATGGGTGTGCGGGCTACCGGAGGAACCGGTGACTGCCAGTACGCGGGGTGCGTGGCGGACCTGAACGGCAAGTGTCCGGCGGAGTTGCGGGTCAAGGACGGCGGCGGCGCGGTGGTGGCGTGCAAGAGCGCGTGTGCGGCGTTTAACGCGGCGGAGTTTTGCTGCACCGGCGACCACTCCACGCCGCAGACGTGTTCGCCGACGCATTACTCGGAGATTTTTAAGAATGCGTGCCCCACGGCGTACAGTTACGCCTACGATGATGCTTCCAGCACTTGCACGTGTTGTGGATCGGATTACCGAATCACTTTTTGCCCCACGGGATCGTCCTAG 756 0.6217 MALNPNSKTSALFHLLLFLFGNVASATVFTLENHCSHTVWPGTLSGNGAAILGDGGFPLAPGSSVHLTAPAGWSGRFWARTGCSFDGSGNGKCDTGDCAGGLRCTGGGVPPVTLAEFTIGTGSNGNKDFYDVSLVDGYNVGMGVRATGGTGDCQYAGCVADLNGKCPAELRVKDGGGAVVACKSACAAFNAAEFCCTGDHSTPQTCSPTHYSEIFKNACPTAYSYAYDDASSTCTCCGSDYRITFCPTGSS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0177 251 ProSitePatterns Thaumatin family signature. 89 104 IPR017949 -
Ssu5g0177 251 Pfam Thaumatin family 33 247 IPR001938 -
Ssu5g0177 251 PANTHER OS03G0233200 PROTEIN 23 247 IPR001938 -
Ssu5g0177 251 ProSiteProfiles Thaumatin family profile. 26 249 IPR001938 -
Ssu5g0177 251 CDD TLP-PA 28 246 - -
Ssu5g0177 251 PIRSF PR5 1 251 IPR001938 -
Ssu5g0177 251 Gene3D Thaumatin 27 247 IPR037176 -
Ssu5g0177 251 PRINTS Pathogenesis-related protein signature 89 118 IPR001938 -
Ssu5g0177 251 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Ssu5g0177 251 PRINTS Pathogenesis-related protein signature 76 87 IPR001938 -
Ssu5g0177 251 PRINTS Pathogenesis-related protein signature 28 40 IPR001938 -
Ssu5g0177 251 PANTHER PATHOGENESIS-RELATED PROTEIN 5 23 247 - -
Ssu5g0177 251 SUPERFAMILY Osmotin, thaumatin-like protein 28 248 IPR037176 -
Ssu5g0177 251 SMART tha2 29 247 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0177 Ssu-Chr5 3552526 3553840 Wgd