Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0176 ATGGAGTTCATGGTTCGGTGTAGTTCGTGCGCGCTATCCAGATTTCGTTGCAACCTTCGATTCGCCGTCGTTGTTTTCGAGTTCAATGTTGTTCCAGCATCTAGGGCTGAGGCTTTTCTAATTAACCCGGTGAACTATGCTTTGGGATCTAATTTGAAGCTGAAAAATATTGTATTGATATTGGCATGGTTGGAAGTCAATAATGCAAAGCCCCGAGAACACCAATCTCAATGGGGAGGGTTGGAAGGGAGGATTGAGAACATTGCCTCGCACTCTTGCATACATGACCAGATACTTGAACAGAGAAAGCGACCTGGTAACAAGGTGTATTCAGTTACCCCACAGGTTTATGAGCCTGGTCTCTCAAAACCCCTCCAGCATAAAGGTAGGGCGTTACTTGGTGTATCAACATCATTGGAGCCTCAAGGGAATGAAAAGCAACCTATTAGGATATATCTAAATTATGATGCTGTTGGTCACTCCCCTGACAGGGATTGTCAAAAAATTGGTGATATTGTCAAgCTTGGGGAGCCTCCCATGACTTCTCTTCCTGGTTTGCCTTCTTGTGATCCTCTTGCTGATCCTCCAGTATTTGGTGATTGTTGGTATAACTGCACTTCCGAAGATATCTCAGGAGAGGACAAAAAACATCGCCTTCGTAAGGCATTAGGTCAGACAGCTGACTGGTTTAGGAGAGCATTGTCTGTTGAGCCTGTCAAGGGGAACTTGCGATTAAGTGGATACTCTGCCTGTGGACAAGATGGAGGTGTGCAGCTTCCTCATGAATATGTTGAAGAGGGAGTCTCTAATGCTGACTTAGTTCTCTTGGTGACTACAAGACCTACAACTGGGAATACACTTGCTTGGGCAGTGGCATGTGAACGGGACCAATGGGGCCGTGCTATAGCTGGACATGTTAATGTTGCTCCTCGTCATTTGACAGCTGAGGCAGAGACTTTGCTTTCAGCTACTCTGATACATGAGGTTATGCATGTTCTTGGTTTTGATCCTCATGCCTTTGCTCATTTTAGAGATGAAAGGAAAAGACGCCGTAATAAGGTTACTGAACAAGTTATGGATGAAAAAATTGGGCGGATGGTAACACGTGTGGTGCTTCCACGTGTAGTCATGCATTCTCGACATCATTATGCGGCGTTCTCAGAAAATTTTACTGGCTTAGAGCTGGAAGATGGTGGAGGACGTGGCACGTcagGGTCTCACTGGGAAAAGAGGCTTCTGATGAATGAGATCATGACTGGTTCTGTGGATACAAGATCTGTAGTTTCAAAAATGACGCTAGCTCTTTTAGAAGATAGTGGATGGTACAAAGCCAATTATATCATGGCAGACCTACTTGACTGGGGTCACAACCAGGGTACCGAGTTTGTTACCTCCCCTTGCAATTTGTGGAAGGGGGCCTATCATTGCAACACAACACAGTTTTCAGGTTGTACGTATAATAGAGAGGCAGAGGGTTACTGCCCAATTCTAACCTACAGTGGAGACCTTCCTCAGTGGGCTCGGTATTTTCCTCAAGCTAATAAAGGTGGACAATCCTCGTTAGCTGATTATTGCACTTATTTTGTTGCATACTCTGATGGATCATGTACAGACACTAGCAGTGCACGGGCACCTGATAGAATGCTAGGTGAAGTCCGAGGAAGTAACTCTAGGTGTATGGCCTCATCATTAGTGCGCACAGGATTTGTACGAGGTTCTCTGACCCAGGGAAATGGTTGTTATCAGCACAGGTGTATCAACAATTCTTTAGAGGTTGCTGTGGATGGTATCTGGAAAGTGTGTCCTCGAGCTGGTGGACCCATTCAGTTCCCTGGCTTTAATGgTGAGTTAATCTGCCCTGCATATCATGAGCTCTGTAACAGAGATCCAGTGGTTGTGTCTGGGCAATGTCCCAGTTCATGTAATTTCAATGGAGGTTGTGTTGATGGAAGGTGCCACTGCTTTCTTGGATTTCATGGTCATGATTGCAGTAGACGTTCCTGCCCCAGCAATTGCACTGGCAATGGCATGTGCCTCTCCAGTGAAATATGTGAATGTAAAGCTGGCTATACTGGCATTGACTGTTCCACTGCCGTTTGTGATGAGCAATGCAGCCTTCATGGTGGGGTTTGTGATAATGGAGTTTGTGAATTCCGCTGTTCTGACTATGCGGGATATACATGCCAGAACAGCTCCGTGCTCCTCTCCAGTCTTTCAGTTTGCAAAAATGTTCTAGGAAATGATATTTCCGGGCAGCATTGTGCTCCCAGTGAACCTAGCATACTACAGCAGCTAGAAGAAGTGGTTGTCATGCCCAACTACCATCGATTATTCCCTGGTGGTGCtagaaaactatttaatttatttggaagCACCTACTGTGATGAGGCAGCTAAAAGGCTTGCCTGCTGGATCTCAATCCAGAAGTGTGAGAAGGATGGAGACAACAGGCTACGAGTATGTCATTCTGCATGTCAGGCTTATAATCTAGCATGTGGAGCTTCACTGGACTGCGGTGACCAAACCCTTTTCAGCAGCGAGGGGGAGGGGGAGGGTCAGTGCACTGGCTCTGGTGAGATGAAACTATCATGGTTTAATCGACTGAGAAGTAGTTTTTCTTTGAGAAATAGTTCCTCCAAAGGTATATCTGTAAGATATAGGCAGCTTTAG 2670 0.4536 MEFMVRCSSCALSRFRCNLRFAVVVFEFNVVPASRAEAFLINPVNYALGSNLKLKNIVLILAWLEVNNAKPREHQSQWGGLEGRIENIASHSCIHDQILEQRKRPGNKVYSVTPQVYEPGLSKPLQHKGRALLGVSTSLEPQGNEKQPIRIYLNYDAVGHSPDRDCQKIGDIVKLGEPPMTSLPGLPSCDPLADPPVFGDCWYNCTSEDISGEDKKHRLRKALGQTADWFRRALSVEPVKGNLRLSGYSACGQDGGVQLPHEYVEEGVSNADLVLLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAEAETLLSATLIHEVMHVLGFDPHAFAHFRDERKRRRNKVTEQVMDEKIGRMVTRVVLPRVVMHSRHHYAAFSENFTGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYKANYIMADLLDWGHNQGTEFVTSPCNLWKGAYHCNTTQFSGCTYNREAEGYCPILTYSGDLPQWARYFPQANKGGQSSLADYCTYFVAYSDGSCTDTSSARAPDRMLGEVRGSNSRCMASSLVRTGFVRGSLTQGNGCYQHRCINNSLEVAVDGIWKVCPRAGGPIQFPGFNGELICPAYHELCNRDPVVVSGQCPSSCNFNGGCVDGRCHCFLGFHGHDCSRRSCPSNCTGNGMCLSSEICECKAGYTGIDCSTAVCDEQCSLHGGVCDNGVCEFRCSDYAGYTCQNSSVLLSSLSVCKNVLGNDISGQHCAPSEPSILQQLEEVVVMPNYHRLFPGGARKLFNLFGSTYCDEAAKRLACWISIQKCEKDGDNRLRVCHSACQAYNLACGASLDCGDQTLFSSEGEGEGQCTGSGEMKLSWFNRLRSSFSLRNSSSKGISVRYRQL 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0176 889 Gene3D Leishmanolysin , domain 2 342 467 - -
Ssu5g0176 889 Gene3D Leishmanolysin domain 4 531 626 - -
Ssu5g0176 889 PRINTS Leishmanolysin (M8) metalloprotease family signature 430 459 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Ssu5g0176 889 PRINTS Leishmanolysin (M8) metalloprotease family signature 277 306 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Ssu5g0176 889 ProSiteProfiles EGF-like domain profile. 664 696 IPR000742 -
Ssu5g0176 889 Gene3D Leishmanolysin domain 3 471 529 - -
Ssu5g0176 889 ProSitePatterns EGF-like domain signature 1. 684 695 IPR000742 -
Ssu5g0176 889 PANTHER METALLOENDOPEPTIDASE/ZINC ION-BINDING PROTEIN 48 861 - -
Ssu5g0176 889 Pfam Leishmanolysin 203 627 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Ssu5g0176 889 ProSitePatterns EGF-like domain signature 2. 684 695 IPR000742 -
Ssu5g0176 889 Gene3D - 142 332 - -
Ssu5g0176 889 Pfam EGF-like domain 668 695 IPR013111 -
Ssu5g0176 889 Gene3D Laminin 668 698 - -
Ssu5g0176 889 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 142 630 - -
Ssu5g0176 889 PANTHER LEISHMANOLYSIN-LIKE PEPTIDASE 48 861 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Ssu5g0176 889 Gene3D - 627 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0176 Ssu-Chr5 3541587 3550424 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0176 5 3541587 3550424 Ssu5g0176 5 3541587 3550424 ECH