Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0157 ATGGCTGAACAACGCGCCACCTCCGACACTCGCCTCCACCTCTCCGTCGCACCGCCATTGCAGATCTCCAAAGATGTCCAAGGACCTGACAATCCCATTCCACTCTCACCGCAGTGGCTTCTGCCAAAGCCAGGGGAGAGTAAACCTGGAACAGGATCTGTGGAGAACCACATGGTCTCTAATCCATCATATGGCCATCGCTCAGAGATTGTTAAGACAGCTGGAAATGGAGAGGATGTGCATGATGCCCACAAGAAAAAGGATGTCTTTAGGCCATCCATGTTTGACTCAGAAGGTGGACGTCGTGACCGTTGGCGTGATGAGGAGAGAGACGCTAAGTCCTCCATACGGAAGGATCGTTGGAGGGATGGGGACAAAGACCTAGGTGATTCTCGTAGAGTGGATCGATGGACTGATAATTTGTCTGCAAGGAGCTTTGTAGAAGCACGCCGTGGTACAAATGATAATCATAGATGGAATGATTCAGGAAACCGAGAAACTAACTTTGATCAGCGGCGTGAGAGTAAATGGAACACACGCTGGGGTCCTGATGATAAGGAGCTAGAAGGCATTCGTGAAAAATGGAGTGACTCTGGAAAAGATGGTGATATACATTTGGACAAAGGTTTGTCTCACATTTCCAATCATGGAAAAGATGAGAAGGAGGGAGATCATTATCGGCCTTGGAGACCTAACTACTCACAAAGCCGTGGGAGGGTAGACCCATCCCACACAACACCAAACAAACCAGTCTCTACATTTTCCTATGGGCGTGGCCGTGGGGAGAATACGCCCCCAGTCTCTAGTCTTGGACATGGTCGGGCTGGTTCTTTTGGTAGCTCTTTGAGTAACACATACCCTGGAACTGCATTGGAAAAAGTTGAAAGTGGGCATGAAGAACTTTGCCCCTTTAGATATAATAGGACAAAATTGCTTGATGTGTACAGAGGGACTGGTATGGGTACAAATAGAAAACTAGTTGATGATTTTGTGCAGGTACCTAATCTTACTCAGGATGAACCTTTGGAACCTCTAGCTCTTCTGGCACCCAATTCTGAGGAACTGACTGTCTTAAGGGGTATTGACAAAGGGGAGATAATTAGCAGCAGTGCACCTCAGATGCCAAAAGATGGAAGGAGCTCAACAGATTTTACTCATGCAAGACGAATGAAGCCTGGAAGTGCACCTTTCCAAGaTAGAGGTGAAGATGGAGGTTCTTACAAAGTGCCTGATGAGGTGTCCGGTAATAGAGATTCATCCTTCGAAGGAAATAATTCTGCTCATTCTGGTGCTCCATGGCGAACAACGCCTTTGGGTGAACATGCTACCACCCCGTTTCATGATGGCAGAGATGTAACTGGTGATGTTAGATTAAGAAAAACCGATCTGAACTCACCCCAGCCAAAAGATCCTCATAATCAGTGGGAAAATAATTTGGGTTATTTATCTGACTCCAAAGAAGTAGGTAAGTGGCAAGCTAGTGAAGATCCTCTTGTTAAGAGGCAGTTGTCTGGCATTTTGGACAGTGAACTTGAAACCAGGAGAGTTCCACAGACTGCCCCAGAGGAGTTATCCCTTTTCTATAAAGATCCTAAGGGTCTAATCCAAGGTCcatttaaaggaattgatattatTGGATGGTTTGAGGCTGGATATTTTGGTATTGATTTACCTGTTCGTCTGGAAAATTCAGCAGCTGACTCACCATGGTCGTCTCTTGGTGATGTCATGCCCCATTTACGAGCTAAAGCCCGACCACCCCCGGGGTTTTCTGCACCAAAACCAAATGACTTTACAGATATTCCTGGCCGGCAAATTTCCAGTACATTTGGGAATACCCTTGCTGGTTTGAATGAGGTCGACATATTGAGAAGTGATTCTAGGCATAGGCAGAATTCTGATACTGAAGCTGAAAACAGGTTTCTGGAGTCACTTATGTCTGGTAACAAGAACAGTCCTCCCCTTGATAGCCTGACATTATCAGAAGGTTTACAAGGGTTTGTTGGAAATAATCCTGGTAATGTGGGCCCATCAGGAGTTGATAGTGGAAATAATCTTTACTTGCTTGCCAAGAGGATAGCGCTTGAACGACAGAGGTCCTTGCCCAATCCTTACCCATATTGGCCGGGGCGTGATGCAGCTTCCTTTGCTCCAAAATCGGATGTTGTTCCAGATGCATCATTGCATTCAAAACTTTTGTCTTCAGTGAGTGATAACTCCCATCAACCTCAATCCCAAAATTCTGAGTTATTGTCAATCATTCAAGGATTATCCGATAGGGCATCTACAGGCTTAAATAATGGTGCTGCTGGATGGCCAAATTATCCCTTACAAGGTGCATTGGATCCTCTGCAGAATAAAATTGACTTACTTCATGATCAAAATTTTCCTCAAATGCCATTTGGAATTCAACAACAAAGGCTGCCAACACAAAACCAAGTATCTTTAAGCAATTTACTGGCTCAAGCTGCTGATAACCCATCCAATGCTTTGACAGCGGAGAAGCTACTTTCTTCGGGTTTATCACAAGATCcgcaaatattaaatatgttgcAACAGCAATACTTATTGCAACTGCATTCTCATGCAGCTGCTCAAGCACAGCAGATGCCCTTGATTGATAAACTCCTGTTGCTGAAGCAGCAACAGAAGCAGGAGGAGCAGCAGCAGTTACTGCGACAACAGCAGCAACTGCTTTCTCAAGTGTTGCAGGACCAACAGTCTAGCCAGCTTTTTAGCAATTCATCTTATGGTCAGTTGCAAGGTGTGTTACCCATGGGGAATTTGCGTGTGGATCCTTCTCAACTTCAATCACCACAAGAGATCTTTCCCATGAGCTCTCAGACTCCAATTCCTTGTGTGTATAATGAGCATAATTCTAATGCTTTGAATTTACCTCCAAAAGTTAGTCAAGACACAAATTGTAATGTAAGCAGTGAAGCTTCTATACGTCTGCCACACCAATTATTTGGGGATACTAGTTGTCCAGAAAATTGGGGCCCTAATCTTACTGAACAAATTAATGAGAAGTATCAGAAGGAAGCGTTCCCCATATCAACTGTTGAGAGTTCTCCATTGCTTCATCAGGATAGATCCAAAGAGGAACCACACATTGTGCCAGAAACTCTTTCTGTTTCTGACTACACTGCTAAGTCGGTGGAGCAGGTGCTACCCAGCAATTTTAGGCCTGATGGTGTTGTCATGACCTCAACTTCTAAGCCTGGTGAAAATTCTGGACATCTACAGTTTGTTGCACCTACTGTTAACTTATTTTCAGCTGGATCTAATGGAATTGAGTTACCACCAGTGAGTGATCCTGGCATGGAGGTGAAGATCAAATCAGATATTGTGCATCAAGAGCAGCATGCTGGAAGAGACAGCTACATATCTGAGCCCTCAGTGGAAGATGTACAAAACATTGAAGCTCATGAACCCAAAAAGGCTGCTGAGAAGAAATCTAAGAAgcaaaaatcaatcaaatctcAGTCTTCTGATCAAACAAAGGGAGTGCTAAAAAATGTGACTTTGCAGCCATCGAAGCAGTCAGAAGCTGAAATGCCAAATTTAAGTGAGTTTGGGGAAGCCAACAGGGATGAATCAGTACATGAAACAAATATGCAACAAACAAGAGTTAAGGGAGCTCAGACTGGAAGTGCAGTCCTAGAGGCAGCTGATTGCCAACAGGCTAGTGGCTTTCCTGCTATTGCTACTGAAAGCACTACTGAAACAGTTGATGTGGGTGAGGCCAAGGCAGCTACTTCTGTTTTGACACAGAAAACTGAAGTACCTGCAGGACGAGCATGGAAACCTGCTCCAGGTGTCAAACCAAAATCTTTCTTAGAAATTCAACAGGAAGAACAGAGAAAGGCACAGACAGAAATTCTTGTATCTGATATTGCTGCTTCTGTCAATTCAATGAGTCTGATAACTCCCTGGGCTGGGGTTGTGGCCAATCCAGACTCTCTGAAGGTATCTAGTGAAAGTCACAGAGAAGCAGGAAATACAGAATATCCTGTTAAATCTGAAACTTTTCAAAATCTTAAGAGCAAGAAAAGTCCACTACATGATCTATTAGCAGAAGAAGTTCTAAAGAAATCTAATGAAATAGATGCTGAGGTTCCAGATAGTATATTGCCCTCGCATAATGTAGCTGTGCATTCGGAATCACTGGATGATGGCAATTTTATCGAGGCAAAAGATACTAAAAGGAGCCGGAAAAAGTCAGCAAAATCAAAGGGTTCAGGAACTAAAGCTTCATTGCCCATGGTATCTTCTGAGGTACCTATCGCTTCAAGCCCCattgaaaagggaaaaaacTCCCGTTTGGCACAGCAGGAGAAAGAAGAATTGCCTGCCATCCCTGCTGGACCCTCTTTGGGAGATTTTGTTCTTTGGAAAGGAGAGCGAGAACCACCAAGCCCGTCTCCTTCTCCAGCATGGTCTACTGATTCTGGTAGGGTTCCAAAGCCAACTTCATTAAGAGATATTCTGAAGGAGCAGGAGAGAAAAGCCTCTTCTGCAGTTCCCGTGAGCCCAATGCCTCCCCCTCAGAAATCTCAGCCTACCCAGTCTACGTGGAGCAATGCTTCTTTACGGTCCATTTCAGCATCCTCTCCATCTAAAGCTGCTTCTCCAATTCAGATCAATTCCCAAGCTTCTCAATCAAAATACAAAGGGGACGATGACTTGTTCTGGGGTCCAATGGAGCAATCAAAGCAAGATACTAAGCAgtCAGATTTCCCTCAGCTTGCAAGCCAGGGGAGCTGGGGTTCAAAAAATGTTCCTTTGAAAGGTAATTCTCCCGGATTATTGACGCGACAAAAATCAGCTAGTAGCAAACCAACTGAACGGTCTCTAGCATCATCTCCTGCCTCTTCTCAATCAGTgctgaaattgaaaaaagatgCCATGACAAGGCATTCTGAGGCCATGGACTTCAGAGATTGGTGTGAGAATGAGTGTGTTAGGCTTATTGGGACAAAGGATACAAGTTTCCTTGAATTCTGCTTGAAGCAATGCAGATCAGAAGCGGAGATACTTCTTATAGAAAATCTTGGATCATATGATCCTGACCATGAATTCATTGATAAATTCCTCAATTACAAGGAGTTGTTACCATCAGATGTTTTGGACATAGCTTTTCAGGGTAGGAATGATAAGAAAGTTACTGGACAAGGTGTGGCAGGCATAGCATCAGCTAATGCAGATATACAGGATGTGGACTACACTGAAGGATCCTCTAAAGGAGGTGGAAAGAAGAAAGGTAAAAAGGGGAAAAAGGTCAGCCCTTCAGTTTTGGGATTTAACGTTGTGAGTAACCGGATCATGATGGGTGAGATCCAGACTGTAGAAGATTAA 5358 0.4352 MAEQRATSDTRLHLSVAPPLQISKDVQGPDNPIPLSPQWLLPKPGESKPGTGSVENHMVSNPSYGHRSEIVKTAGNGEDVHDAHKKKDVFRPSMFDSEGGRRDRWRDEERDAKSSIRKDRWRDGDKDLGDSRRVDRWTDNLSARSFVEARRGTNDNHRWNDSGNRETNFDQRRESKWNTRWGPDDKELEGIREKWSDSGKDGDIHLDKGLSHISNHGKDEKEGDHYRPWRPNYSQSRGRVDPSHTTPNKPVSTFSYGRGRGENTPPVSSLGHGRAGSFGSSLSNTYPGTALEKVESGHEELCPFRYNRTKLLDVYRGTGMGTNRKLVDDFVQVPNLTQDEPLEPLALLAPNSEELTVLRGIDKGEIISSSAPQMPKDGRSSTDFTHARRMKPGSAPFQDRGEDGGSYKVPDEVSGNRDSSFEGNNSAHSGAPWRTTPLGEHATTPFHDGRDVTGDVRLRKTDLNSPQPKDPHNQWENNLGYLSDSKEVGKWQASEDPLVKRQLSGILDSELETRRVPQTAPEELSLFYKDPKGLIQGPFKGIDIIGWFEAGYFGIDLPVRLENSAADSPWSSLGDVMPHLRAKARPPPGFSAPKPNDFTDIPGRQISSTFGNTLAGLNEVDILRSDSRHRQNSDTEAENRFLESLMSGNKNSPPLDSLTLSEGLQGFVGNNPGNVGPSGVDSGNNLYLLAKRIALERQRSLPNPYPYWPGRDAASFAPKSDVVPDASLHSKLLSSVSDNSHQPQSQNSELLSIIQGLSDRASTGLNNGAAGWPNYPLQGALDPLQNKIDLLHDQNFPQMPFGIQQQRLPTQNQVSLSNLLAQAADNPSNALTAEKLLSSGLSQDPQILNMLQQQYLLQLHSHAAAQAQQMPLIDKLLLLKQQQKQEEQQQLLRQQQQLLSQVLQDQQSSQLFSNSSYGQLQGVLPMGNLRVDPSQLQSPQEIFPMSSQTPIPCVYNEHNSNALNLPPKVSQDTNCNVSSEASIRLPHQLFGDTSCPENWGPNLTEQINEKYQKEAFPISTVESSPLLHQDRSKEEPHIVPETLSVSDYTAKSVEQVLPSNFRPDGVVMTSTSKPGENSGHLQFVAPTVNLFSAGSNGIELPPVSDPGMEVKIKSDIVHQEQHAGRDSYISEPSVEDVQNIEAHEPKKAAEKKSKKQKSIKSQSSDQTKGVLKNVTLQPSKQSEAEMPNLSEFGEANRDESVHETNMQQTRVKGAQTGSAVLEAADCQQASGFPAIATESTTETVDVGEAKAATSVLTQKTEVPAGRAWKPAPGVKPKSFLEIQQEEQRKAQTEILVSDIAASVNSMSLITPWAGVVANPDSLKVSSESHREAGNTEYPVKSETFQNLKSKKSPLHDLLAEEVLKKSNEIDAEVPDSILPSHNVAVHSESLDDGNFIEAKDTKRSRKKSAKSKGSGTKASLPMVSSEVPIASSPIEKGKNSRLAQQEKEELPAIPAGPSLGDFVLWKGEREPPSPSPSPAWSTDSGRVPKPTSLRDILKEQERKASSAVPVSPMPPPQKSQPTQSTWSNASLRSISASSPSKAASPIQINSQASQSKYKGDDDLFWGPMEQSKQDTKQSDFPQLASQGSWGSKNVPLKGNSPGLLTRQKSASSKPTERSLASSPASSQSVLKLKKDAMTRHSEAMDFRDWCENECVRLIGTKDTSFLEFCLKQCRSEAEILLIENLGSYDPDHEFIDKFLNYKELLPSDVLDIAFQGRNDKKVTGQGVAGIASANADIQDVDYTEGSSKGGGKKKGKKGKKVSPSVLGFNVVSNRIMMGEIQTVED 1785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0157 1785 MobiDBLite consensus disorder prediction 1742 1761 - -
Ssu5g0157 1785 MobiDBLite consensus disorder prediction 1389 1630 - -
Ssu5g0157 1785 MobiDBLite consensus disorder prediction 236 259 - -
Ssu5g0157 1785 MobiDBLite consensus disorder prediction 72 135 - -
Ssu5g0157 1785 Gene3D - 511 590 IPR035445 -
Ssu5g0157 1785 SUPERFAMILY GYF domain 515 580 IPR035445 -
Ssu5g0157 1785 MobiDBLite consensus disorder prediction 1143 1189 - -
Ssu5g0157 1785 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1785 - -
Ssu5g0157 1785 MobiDBLite consensus disorder prediction 53 67 - -
Ssu5g0157 1785 MobiDBLite consensus disorder prediction 1162 1186 - -
Ssu5g0157 1785 MobiDBLite consensus disorder prediction 150 281 - -
Ssu5g0157 1785 CDD GYF 523 580 IPR003169 GO:0005515
Ssu5g0157 1785 Coils Coil 877 901 - -
Ssu5g0157 1785 SMART gyf_5 524 579 IPR003169 GO:0005515
Ssu5g0157 1785 MobiDBLite consensus disorder prediction 1143 1161 - -
Ssu5g0157 1785 MobiDBLite consensus disorder prediction 1520 1557 - -
Ssu5g0157 1785 MobiDBLite consensus disorder prediction 1570 1630 - -
Ssu5g0157 1785 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1785 - -
Ssu5g0157 1785 MobiDBLite consensus disorder prediction 366 453 - -
Ssu5g0157 1785 MobiDBLite consensus disorder prediction 417 432 - -
Ssu5g0157 1785 Pfam GYF domain 527 573 IPR003169 GO:0005515
Ssu5g0157 1785 MobiDBLite consensus disorder prediction 150 228 - -
Ssu5g0157 1785 ProSiteProfiles GYF domain profile. 523 574 IPR003169 GO:0005515
Ssu5g0157 1785 MobiDBLite consensus disorder prediction 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0157 Ssu-Chr5 3115032 3123540 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0157 5 3115032 3123540 Ssu5g0157 5 3115032 3123540 ECH