Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0155 ATGGCAATCTTGCTCTTGCGTTCTGCAATCCTCCTTCCGTGTCTTACTTTCTTTCTCACATTTAACCTTGCAAGTTCTGAATCATTTATCGGCGTGAACTATGGAATAGTCGCCGACAACCTGCCGCCGCCGTCCGCGACGGCCAAACTGCTCCAGTCGACGGCCATCAGAAAGGTCCGGCTGTACGGATCCGACCCGGGCATAATAAAAGCTCTGGCGAACACGGGAATCGGAATCGTGATCGGAGCGGCGAACGGGGACATTCCGGGACTCGCGTCGGACCCGAACTTCGCGAAAACGTGGGTGAACTCCAACGTTGTTCCGTACTACCCCGCGAGCAACATCATCCTCATAACCGTGGGCAACGAGGTGATAACCTCGAACGACCCGAACCTGATGAACCAGATGTTGCCGGCGATTCAGAACGTGCAGAACGCCCTCGACGCCGCTTCTCTGGGCGGGAAAATCAAGGTGTCGACGGTGCACTCCATGGCGGTTCTGAAGGACTCTGAACCTCCCTCCGCCGGGAGGTTCCACCCCGAATACGACACCGCTTTGCAGGGGCTGTTGTCGTTTAACAACGCCACGGGCTCGCCCTTTGCCATCAACCCTTACCCGTACTTTGCCTACAGAAGCGACCCTGGCAGAGCCGATAACCTTGCCTTCTGCCTTTTCCAGCCCAACTCCGGCCGAGTTGACTCAAACACCAACATCAAGTACATGAACATGTTCGATGCTCAGGTGGATGCGGTTCGATCTGCGTTGGATTCTATGGGGTTTAAGAATGTTGAGATTGTGGTTGCGGAGACAGGGTGGCCCTACAAAGGAGACAGCGATGAGGCTGGTCCAAGTCTTGAGAATGCTAAGGCTTATAACGGTAATCTGATTGCGCACCTGCGATCTATGGTTGGGACCCCATTGATGCCAGGGAAATCAGTGGACACGTACCTCTTTGCGTTGTACGATGAGGACTTGAAGCCTGGACCTGCTTCTGAGAGAGCCTTTGGGCTTTACAACCCTGATCTATCCATGATCTATGACGCTGGCCTCTCCAAACAGCAACAAACTAGTAGCCCCCCCGTGGTTGCCCCGACTACTCCGGATGTGCCAAAATCTCCCGTGACTCCAACAACAGTTCCAAGTCctaccaaaacaaataataatgcaaCATGGTGTGTGCCAAAAGCAGGAGTAACAGATGCAGAGTTACAAGCAAATTTGGATTATGCTTGTGGGCAGGGGATTGATTGTACCGCAATTCAACAAGGAGGAGCTTGTTTTGAACCGAACACATTAGTAAACCATGCTGCGTATGCCATGAATCTATTGTATCAAACTGCTGAACGGAATCCATTGACTTGTGATTTCTCGCAAACAGCCATGTTATCATCGAATAATCCAAGTTACAAGAGTTGTGTTTATGCTGGAGGAAATGCCTTACCTAAAAAACAAGAAAGTAGATAA 1464 0.5068 MAILLLRSAILLPCLTFFLTFNLASSESFIGVNYGIVADNLPPPSATAKLLQSTAIRKVRLYGSDPGIIKALANTGIGIVIGAANGDIPGLASDPNFAKTWVNSNVVPYYPASNIILITVGNEVITSNDPNLMNQMLPAIQNVQNALDAASLGGKIKVSTVHSMAVLKDSEPPSAGRFHPEYDTALQGLLSFNNATGSPFAINPYPYFAYRSDPGRADNLAFCLFQPNSGRVDSNTNIKYMNMFDAQVDAVRSALDSMGFKNVEIVVAETGWPYKGDSDEAGPSLENAKAYNGNLIAHLRSMVGTPLMPGKSVDTYLFALYDEDLKPGPASERAFGLYNPDLSMIYDAGLSKQQQTSSPPVVAPTTPDVPKSPVTPTTVPSPTKTNNNATWCVPKAGVTDAELQANLDYACGQGIDCTAIQQGGACFEPNTLVNHAAYAMNLLYQTAERNPLTCDFSQTAMLSSNNPSYKSCVYAGGNALPKKQESR 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0155 487 Gene3D Glycosidases 29 358 - -
Ssu5g0155 487 Pfam Glycosyl hydrolases family 17 30 347 IPR000490 GO:0004553|GO:0005975
Ssu5g0155 487 SUPERFAMILY (Trans)glycosidases 30 348 IPR017853 -
Ssu5g0155 487 Pfam X8 domain 390 461 IPR012946 -
Ssu5g0155 487 Gene3D - 384 481 - -
Ssu5g0155 487 MobiDBLite consensus disorder prediction 363 377 - -
Ssu5g0155 487 PANTHER GLYCOSYL HYDROLASE FAMILY 17 PROTEIN 6 465 - -
Ssu5g0155 487 MobiDBLite consensus disorder prediction 354 386 - -
Ssu5g0155 487 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 6 465 IPR044965 GO:0004553|GO:0005975
Ssu5g0155 487 SMART X8_cls 390 474 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0155 Ssu-Chr5 3094532 3098531 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0155 5 3094532 3098531 Ssu5g0155 5 3094532 3098531 ECH