Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0150 ATGTCCATATCAACATCATTATCCTCAGTCCCCGCTCGTCTCACACTCCTCGCTCTCTTCTCCGCCACCACCTTCTATTGCCTCTACAAATCTCGCCGCCTCAGACACCTCAAACACAAACTCCAccctaaccctaaccctaaccctaaGATCCTCTTCCTCTCCGAAACCGGCACCGCCAAATCCCTCGCTCGCCGCCTTCACCGCCTCCTCGCCTCCAACGACGTCGCATTCGACCTCGTCGATTGCCAGCACTATGAGCCCGAGGACCTCCCCAAGGAGACGCTCCTCCTCCTCGTCGCCTCCACGTGGCAGGACGGCGGCCCCCCCGTCGCCTCCCGCTTCTTCGCCACGTGGATCGCCGAGGCCGCCGCCGACTTCCGCGCCGGCTCCCTGCTCCTCTCGCGCTGCAGGTTCGCCGTCTTCGGCGTCGGGAGCCGAGCCTACGGCGACTCCTTCAACGCCGTCGCGAGGGGCCTCGCGACGCACCTGAGGGCGCTCGGCGCCAAGGAGGTGGTTCCACTTTGTGAAGGGGATGTTGACGGGGCTGACGTGGACGCGGTTTTCGATGGGTGGGGTGAGAAGGTGGTTGCGGTTTTGAAAGGCGGTGGTGTTGTGGAAAGTGGCGATGATGATGACGTGGCCGGGGAATGCGGCGTTGTTTCGAGTTCCGAAGAGGATTCTGACGTGGAGAGTAGTGAGATCGTTGATCTTGAGGACATTGCTGGTAAAGCTCCTTCGAGAAAGTCAGTGGCTAATGGGGGAGAGAGTAATGGGAAATTGAATGGCAGAAGAGAAATGGTGACTCCAGTGATTCGAGCAAATTTAGAGAAGCAGGGGTATAAAATTATTGGGTCGCACAGTGGTGTCAAGATTTGTAGATGGACCAAGGCACAGCTTCGAGGTCGAGGTGGTTGTTATAAGCACTCGTTTTATGGAATTGAGAGTCACAGATGCATGGAGGCAACCCCTAGCTTGGCGTGCGCAAACAAATGTGTTTTCTGCTGGAGGCATCACACAAATCCAGTAGGGAAAAGTTGGCAGTGGCAGATGGATGATCCAATAGAGATCGTAAATTCTGCAATAGACCTGCACACAAATATgattaaacaaatgaaaggaGTTCCTGGAGTCACCTTGGAGCGATTAACTGAAGGTCTCTCACCACGTCATTGTGCATTATCTCTTGTTGGTGAACCTATTATGTATCCAGAAATAAATGCACTTGTGGATGAGTTGCACAAAAGGAGGATTTCCACTTTCCTAGTTACAAATGCACAATTTCCAGAGAAAATTAAGTCGCTGAAACCTGTCACCCAGTTATATGTCAGTGTAGATGCTGCAACAAAGGATTCTTTGAAGGCAATTGATAGACCACTCTTTGGAGATTTCTGGGAGCGATTCATTGATTCCTTGACTGCTCTAAAGCAAAAACATCAGCGAACTGTATACCGCTTGACCCTGGTGAAAGGTTGGAATACTGAAGATGTTGATGCTTATTCTAAGCTTTTTAGTATAGGAGAACCTGACTTTGTTGAAATCAAGGGAGTTACCTATTGTGGCTCGTCCACTACATCAAAATTGACAATGGAAAATGTCCCTTGGCATACTGATGTGAAAGCTTTTTCTGAGGCCCTAGCTTTGAAAAGCCAAGGAGAGTATGAAGTCGCATGTGAGCATGCTCACTCATGTTGTGTCCTCTTagcaaaaactaataaattcaaaattgatgGCCAGTGGTATACATGGATAGactatgaaaaatttaatgatcTGGTGGCATCTGGAAGAACTTTTGACAGCAGAGATTACATGACTGCCACACCGTCCTGGGCCTTCTATGGATCAGAGGAAGGTGGATTTGATCCAGGACAATTGAGATACAGGAAAGAGAGACGTCACAAGTCAAGCCGCAATCAATCAGGTTAG 1929 0.4837 MSISTSLSSVPARLTLLALFSATTFYCLYKSRRLRHLKHKLHPNPNPNPKILFLSETGTAKSLARRLHRLLASNDVAFDLVDCQHYEPEDLPKETLLLLVASTWQDGGPPVASRFFATWIAEAAADFRAGSLLLSRCRFAVFGVGSRAYGDSFNAVARGLATHLRALGAKEVVPLCEGDVDGADVDAVFDGWGEKVVAVLKGGGVVESGDDDDVAGECGVVSSSEEDSDVESSEIVDLEDIAGKAPSRKSVANGGESNGKLNGRREMVTPVIRANLEKQGYKIIGSHSGVKICRWTKAQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWQMDDPIEIVNSAIDLHTNMIKQMKGVPGVTLERLTEGLSPRHCALSLVGEPIMYPEINALVDELHKRRISTFLVTNAQFPEKIKSLKPVTQLYVSVDAATKDSLKAIDRPLFGDFWERFIDSLTALKQKHQRTVYRLTLVKGWNTEDVDAYSKLFSIGEPDFVEIKGVTYCGSSTTSKLTMENVPWHTDVKAFSEALALKSQGEYEVACEHAHSCCVLLAKTNKFKIDGQWYTWIDYEKFNDLVASGRTFDSRDYMTATPSWAFYGSEEGGFDPGQLRYRKERRHKSSRNQSG 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0150 642 CDD Radical_SAM 324 500 - -
Ssu5g0150 642 ProSiteProfiles Radical SAM core domain profile. 312 555 IPR007197 GO:0003824|GO:0051536
Ssu5g0150 642 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 8 636 - -
Ssu5g0150 642 SUPERFAMILY Radical SAM enzymes 325 504 - -
Ssu5g0150 642 Gene3D Aldolase class I 254 582 IPR013785 -
Ssu5g0150 642 Gene3D - 23 208 IPR029039 -
Ssu5g0150 642 Pfam Radical SAM superfamily 324 502 IPR007197 GO:0003824|GO:0051536
Ssu5g0150 642 PRINTS Flavodoxin signature 98 109 IPR001094 GO:0010181
Ssu5g0150 642 PRINTS Flavodoxin signature 161 180 IPR001094 GO:0010181
Ssu5g0150 642 PRINTS Flavodoxin signature 136 146 IPR001094 GO:0010181
Ssu5g0150 642 PRINTS Flavodoxin signature 50 63 IPR001094 GO:0010181
Ssu5g0150 642 MobiDBLite consensus disorder prediction 619 642 - -
Ssu5g0150 642 SFLD Radical SAM 264 574 IPR007197 GO:0003824|GO:0051536
Ssu5g0150 642 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 8 636 IPR034556 GO:0008033|GO:0051539
Ssu5g0150 642 ProSiteProfiles Flavodoxin-like domain profile. 49 197 IPR008254 GO:0010181
Ssu5g0150 642 SUPERFAMILY Flavoproteins 48 200 IPR029039 -
Ssu5g0150 642 Pfam Wyosine base formation 507 570 IPR013917 -
Ssu5g0150 642 Pfam Flavodoxin 51 192 IPR008254 GO:0010181
Ssu5g0150 642 SFLD tRNA wybutosine-synthesizing 264 574 IPR034556 GO:0008033|GO:0051539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0150 5 3000628 3005268 Ssu5g0150 5 3000628 3005268 ECH