Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0147 ATGGGAGTGGGAGGAATTGTGGTGAGTGTGGTTACAATGTTGTTGTTAATGGTTGGGTTAACAATGGGAATGGGTTTGAGTTCGAGAACGGAATGGTTGGCGTTAAGGGAACTTCGGTCATCGTTGGGGATTAAGGCAAAGTATTGGCCTATAAAAGCTGAACCGTGCCGGAACTGGACCGGGGTTCGGTGCCGGAACGGTCGAGTTGTGGGTATAAACGTGTCAGGTTTGAAGAGAACCAGGTTGGGTAGGCTTAACCAAAGTTTTGAAGTGGGTTCTCTTGTGAATTTGACACTGTTAGAATCCTTTAATGCTTCTGGGTTTATGCTTAATGGGTCTATTCCTGAGTGGTTGGGTGGGAGCCTTGGTGTGTTGAAGGTGCTTGACCTTAGTTTTTGTTCTATAACGGGTTTGATTCCTGATTCAATTGGGGGGTTGAGTGTGTTGAGGGATTTGATGCTTTCAGGGAATTCTCTCACTGGTAGAATGCCTTCAAAGCTTGGGAACCTCACAAGGCTTTCTGTTCTCGATCTCTCTGGTAACTCTCTTTCAGGGTCTGTGCCTGACTCTGTGTCTAGACTTGGGAACCTCACAAGGCTTGACCTTGCTGATAATTTCTTGTCTGGGTTTGTTCCACCTGAACTGGGGGGGCTTTTGggtcttaaaattttgaacctTTCTGGGAATTCTTTTACTGGGTCGGTTCCCTCTCAACTGGGTAACCTTTCCAAGTTGGTTGAGGTTGATCTTAGTATAAATTTTCTGTCGGGGTTGTTGCCGGGTGGTTTGTTTTCTTCTGGGCTTTTGGCCCTTAAGGTTCTCATTCTCAGAGGGAATTTGTTTGATGGTGCTCTTCCTGCTAATTTGAGGTCAATGCCCAGGTTGCAGTTTCTTGATGTGTCCAGTAACAACCTTACTGGGACGCTGCCGAATTTTGCGAGTTGGAATGTTAGTTCTGCTGGTGCTGTGTTCAATCTGTCAAACAATTTGTTCTATGGACCACTGAATACTTCACTGGACAGGTTTAAAATGATTGATTTATCAAGTAATTATTTGGAAGGTGAGGTGCCAGGTGTTGGTAATGTTAATCTAGATAGAAATTGCCTACAGATGATTTCAAACCAGAGGGATTTGGAAGAGTGTAGAGTGTTTTATGCTAGGAGAAATTTACCCTTTTCGTTCCCAGAATCTGATTCTGGGAGCCGCAGACGGGTGATATTCATATTGGTAGGAATATTTGGTGGGCTTGGCTTTATTGTGCTGCTGGCATTGGTCCTCATTCTGGTTCTAAAACAACGTCACAATAGTAGAAGCTTGGAAGTTCAAAGGGGGACCAAAGATGGGGGGCCTGTTCAAGATGGGGAAAGTCCTATACCTCCTAAGGATATTGTTTTTGTGACGGGCGGGGGAGAAGCATTTAGTTTTGAGCAAATGCTCCATTTGACCGGCAATTTTGCTGAAGCAAATGTCATAAAGCATGGTCATTCTGGGGACATCTTCTTGGGAGTCTTGGAAAGTGGAGCAACTGTGGTTGTCAAAAGGGTAGACttgaatttatttaagagaGAATCATATGTTGTGGAATTGAGACTATTAAGTAAGGTTTCACATGCAAGATTGGTCCCAATCCTGGGCCACTGCTtggagaatgagaatgagaaatGTATAGTTTACAAGTACATGCCAAATAGAGATTTAGCTACTTCTTTGCACAGAGCCACTGGTTCAGATGGTAGAATACAGTCCCTGGATTGGATCACGAGATTGAAAATTGCAATAGGAGCTGCTGAAGGCCTAGCTCACCTACATGAGTGCAGCCCTCCCCTTGTCCACAGAGATGTCCAAGCTAGCAGTATACTTCTTGATGATAAATTTGAAGTGCGACTTGGAAGTTTGAGTGAGGTTACTGCCCAAGGAGATCTTCAACAAAGTGTCATCTCAAGGGTTTTCAGCAAGCCGCCATCTTCTAATCAAGGCGATTGTGGTAAATCATCAGTGACATGTGCCTACGATGTTTACTGTTTTGGGAAGATTTTACTCGAGCTGGTTACCGGTAACATTGAAGTCAGCAAGTCAGATGATGCCACCACAAAAGAGTGGTTAGAACAAACCTTGCCTTACATCAATATATACGATAAGGAACGGGTGACTAAGATTGTCGACCCATCATTGATCGTGGACGAGGACCTGTTGGAAGAGGTATGGGCCATGGCAATTGTGGCCCATGCATGTTTGAATCCCAAGCCTTCCAAACGTCCACCTATGAGACATGTCCTGAAAGCATTGGAAAATCCATTGAAGATTGTGAGAGAAGAAAATACTAGCTCAGCAAAGTTGAGAACAAACTCATCTAGGAAATCTTGGAGCACTGCATTCTTTGGTAGCTGGAGACACAGCTCATCAGACAGTGTTGTTGCCGCAGCAAATACAAACAAGGAGAGTACTAGTGACACTAAAAAGTCAGGAAAAGTAGGTTCTCAAAGTAGTGGAAATGATCACTCATCTTCCAATAAAAGGTCATCCAATGAAATTTTCCCTGAACCATTGGAAATACAAGATGTGGAGACCGGAGAGGCAAGATAA 2583 0.4324 MGVGGIVVSVVTMLLLMVGLTMGMGLSSRTEWLALRELRSSLGIKAKYWPIKAEPCRNWTGVRCRNGRVVGINVSGLKRTRLGRLNQSFEVGSLVNLTLLESFNASGFMLNGSIPEWLGGSLGVLKVLDLSFCSITGLIPDSIGGLSVLRDLMLSGNSLTGRMPSKLGNLTRLSVLDLSGNSLSGSVPDSVSRLGNLTRLDLADNFLSGFVPPELGGLLGLKILNLSGNSFTGSVPSQLGNLSKLVEVDLSINFLSGLLPGGLFSSGLLALKVLILRGNLFDGALPANLRSMPRLQFLDVSSNNLTGTLPNFASWNVSSAGAVFNLSNNLFYGPLNTSLDRFKMIDLSSNYLEGEVPGVGNVNLDRNCLQMISNQRDLEECRVFYARRNLPFSFPESDSGSRRRVIFILVGIFGGLGFIVLLALVLILVLKQRHNSRSLEVQRGTKDGGPVQDGESPIPPKDIVFVTGGGEAFSFEQMLHLTGNFAEANVIKHGHSGDIFLGVLESGATVVVKRVDLNLFKRESYVVELRLLSKVSHARLVPILGHCLENENEKCIVYKYMPNRDLATSLHRATGSDGRIQSLDWITRLKIAIGAAEGLAHLHECSPPLVHRDVQASSILLDDKFEVRLGSLSEVTAQGDLQQSVISRVFSKPPSSNQGDCGKSSVTCAYDVYCFGKILLELVTGNIEVSKSDDATTKEWLEQTLPYINIYDKERVTKIVDPSLIVDEDLLEEVWAMAIVAHACLNPKPSKRPPMRHVLKALENPLKIVREENTSSAKLRTNSSRKSWSTAFFGSWRHSSSDSVVAAANTNKESTSDTKKSGKVGSQSSGNDHSSSNKRSSNEIFPEPLEIQDVETGEAR 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0147 860 SUPERFAMILY Protein kinase-like (PK-like) 463 762 IPR011009 -
Ssu5g0147 860 SUPERFAMILY L domain-like 48 312 - -
Ssu5g0147 860 MobiDBLite consensus disorder prediction 804 843 - -
Ssu5g0147 860 PANTHER OS01G0253100 PROTEIN 7 131 IPR045271 GO:0004714|GO:0006468
Ssu5g0147 860 Gene3D Phosphorylase Kinase; domain 1 460 560 - -
Ssu5g0147 860 Gene3D Transferase(Phosphotransferase) domain 1 561 787 - -
Ssu5g0147 860 ProSiteProfiles Protein kinase domain profile. 485 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0147 860 SMART LRR_typ_2 122 145 IPR003591 -
Ssu5g0147 860 SMART LRR_typ_2 292 316 IPR003591 -
Ssu5g0147 860 SMART LRR_typ_2 242 265 IPR003591 -
Ssu5g0147 860 SMART LRR_typ_2 170 193 IPR003591 -
Ssu5g0147 860 SMART LRR_typ_2 194 218 IPR003591 -
Ssu5g0147 860 Pfam Leucine Rich Repeat 196 218 IPR001611 GO:0005515
Ssu5g0147 860 Gene3D Ribonuclease Inhibitor 30 191 IPR032675 -
Ssu5g0147 860 Gene3D Ribonuclease Inhibitor 192 390 IPR032675 -
Ssu5g0147 860 MobiDBLite consensus disorder prediction 804 860 - -
Ssu5g0147 860 Pfam Leucine rich repeat 125 183 IPR001611 GO:0005515
Ssu5g0147 860 Pfam Protein tyrosine and serine/threonine kinase 489 761 IPR001245 GO:0004672|GO:0006468
Ssu5g0147 860 PANTHER OS03G0724300 PROTEIN 7 131 - -
Ssu5g0147 860 PANTHER OS03G0724300 PROTEIN 167 846 - -
Ssu5g0147 860 PANTHER OS01G0253100 PROTEIN 167 846 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0147 Ssu-Chr5 2964906 2968643 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Ssu5g0147 PK_Tyr_Ser-Thr 8.3e-20 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0147 5 2964906 2968643 Ssu5g0147 5 2964906 2968643 ECH