Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0146 ATGGCCTCAAGCTCAGTTTGGACAACAAAGCAGAACAAAAAGTTTGAGAATGCTTTGGCCATCTACGACAAGGACACCCCAGATCGGTGGCAGAACTTGGCCAGGGCCGTGGGAGGGAAGACAGTGGAGGAAGTGAAAAGGCACTATGAGATGCTCGTCGAAGATTTGAAGCAGATTGAGGAAGGTCACGTGCCCTTGCCCAATTACAGAAATGCTGCCACAACAATAGGAGCCAGCACCAAAGGTTACAGTTACATGGATGAAGAACAAAGGATGAAGGTTCTAAGCCTCCGGTGA 297 0.4916 MASSSVWTTKQNKKFENALAIYDKDTPDRWQNLARAVGGKTVEEVKRHYEMLVEDLKQIEEGHVPLPNYRNAATTIGASTKGYSYMDEEQRMKVLSLR 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0146 98 CDD SANT 7 53 IPR001005 -
Ssu5g0146 98 Gene3D - 1 66 - -
Ssu5g0146 98 ProSiteProfiles SANT domain profile. 2 57 IPR017884 -
Ssu5g0146 98 Coils Coil 42 62 - -
Ssu5g0146 98 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 97 - -
Ssu5g0146 98 SUPERFAMILY Homeodomain-like 7 60 IPR009057 -
Ssu5g0146 98 SMART sant 3 55 IPR001005 -
Ssu5g0146 98 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 97 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0146 Ssu-Chr5 2934138 2934650 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu5g0146 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0146 5 2934138 2934650 Ssu5g0146 5 2934138 2934650 ECH