Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0143 atgagTTTGAGGGAAGAGAATGAAGAGGGAAGGGATCTGAGGAAGCCATTGCTTCACACTGGAAGCTGGTATCGTATGAATGGGAGACAATCCAGTGTGTTCGGTTCCACTCAGGCCTTTCGTGACACCTCCATCTCTGTCTTTGCCTGTGTTCTCATCGTTGCTTTGGGCCCAATTCAGTTTGGTTTCACTGCTGGTTACACCTCACCTACCCAATCTGCTATCATCACTGATCTTGGCCTCTCAGTCTCTGAGTTTTCTTGGTTTGGTTCTTTGTCCAATGTGGGGGCCATGGTTGGAGCAATAGCTAGTGGTCAGATTGCTGACTATATAGGGCGCAAAGggTCTTTGATGATTGCATCCATCCCAAATATTATTGGTTGGCTGGTTATCTCATTTGCAAAAgattcttcttttctttatttgggAAGATTGTTGGAAGGGTTTGGCGTAGGAATAATATCTTACACgGTGCCGGTGTACATAGCTGAGATATCACCTCCAAACTTGAGGGGGGGTTTGGTTTCAGTTAACCAGCTCTCTGTCACCATTGGAATTATGCTGGCGTATCTGCTGGGGATTTTTGTTCAATGGAGAATCCTTGCAATTTTAGGAATTTTACCATGTACATTATTGATACCTGGCCTATTTTTTATTCCTGAGTCTCCTAGATGGCTGGCAAAAATGGGAATGACAGAAGAATTTGAAACATCCTTGCAAGTACTCCGAGGCTTTGATACTGATATTTCTGTTGAAGTGAAtgaaattaagAGGGCTGTTGCTTCATCAAACAGAAGAACTGCAATCCGATTTGCAGAACTCAGACAAAGAAGATATTGGCTTCCCTTAATGATTGGAATTGGACTGCTTATTTTGCAACAGCTTTCTGGAATTAATGGTGTTCTTTTTTATTCCAGTACCATCTTTGAAAGTGCTGGAATTAGTTCGAGTAATGTAGCGACACTTGGAGTTGGTGCTGTTCAGGTTGTTGCCACCAGTTTAACTTTGTGGTTGGCAGACAAGTCTGGTCGCCGGCTTCTCCTTATTGTCTCTTCAACTGGAATGACTTTTAGTCTCTTAGTTGTTGCAATCTCATTCTACATAAagGCTAGTATATCAGAAACTTCTTCCTTGCATGAGATATTGAGCATCTTGTCGCTGGTTGGAGTTGTGGCCATGGTTATTGCATTCTCTCTGGGAATGGGAGCTATGCCATGGATTATAATGTCTGAGATTCTTCCATTAAGCATTAAAAGCCTTGCGGGGAGTGTTGCAACACTTGCCAACTGGTTCTTTTCCTGGTTGGTTACAATGACAGCAAATTTGCTCTTGGACTGGAGCTCTGGAGGAACCTTCACCATATATGCAGTAGTATGTGCCTTGACTGCAGGATTTGTCACTATTTGGGTCCCTGAGACAAAGGGAAAAACTATTGAAGAAATCCAATTGTTTTTCAGATGA 1461 0.4162 MSLREENEEGRDLRKPLLHTGSWYRMNGRQSSVFGSTQAFRDTSISVFACVLIVALGPIQFGFTAGYTSPTQSAIITDLGLSVSEFSWFGSLSNVGAMVGAIASGQIADYIGRKGSLMIASIPNIIGWLVISFAKDSSFLYLGRLLEGFGVGIISYTVPVYIAEISPPNLRGGLVSVNQLSVTIGIMLAYLLGIFVQWRILAILGILPCTLLIPGLFFIPESPRWLAKMGMTEEFETSLQVLRGFDTDISVEVNEIKRAVASSNRRTAIRFAELRQRRYWLPLMIGIGLLILQQLSGINGVLFYSSTIFESAGISSSNVATLGVGAVQVVATSLTLWLADKSGRRLLLIVSSTGMTFSLLVVAISFYIKASISETSSLHEILSILSLVGVVAMVIAFSLGMGAMPWIIMSEILPLSIKSLAGSVATLANWFFSWLVTMTANLLLDWSSGGTFTIYAVVCALTAGFVTIWVPETKGKTIEEIQLFFR 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0143 486 TIGRFAM SP: MFS transporter, sugar porter (SP) family 41 481 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu5g0143 486 PANTHER - 14 484 - -
Ssu5g0143 486 ProSitePatterns Sugar transport proteins signature 2. 146 171 IPR005829 GO:0016021|GO:0022857|GO:0055085
Ssu5g0143 486 ProSiteProfiles Major facilitator superfamily (MFS) profile. 50 474 IPR020846 GO:0022857
Ssu5g0143 486 ProSitePatterns Sugar transport proteins signature 1. 104 121 IPR005829 GO:0016021|GO:0022857|GO:0055085
Ssu5g0143 486 CDD MFS_GLUT6_8_Class3_like 48 480 IPR044775 GO:0008643|GO:0051119
Ssu5g0143 486 SUPERFAMILY MFS general substrate transporter 51 482 IPR036259 -
Ssu5g0143 486 Pfam Sugar (and other) transporter 51 483 IPR005828 GO:0016021|GO:0022857|GO:0055085
Ssu5g0143 486 PRINTS Sugar transporter signature 141 160 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu5g0143 486 PRINTS Sugar transporter signature 410 422 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu5g0143 486 PRINTS Sugar transporter signature 293 303 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu5g0143 486 PRINTS Sugar transporter signature 387 408 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu5g0143 486 PRINTS Sugar transporter signature 58 68 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu5g0143 486 PANTHER SUGAR TRANSPORTER ERD6-LIKE 6 14 484 - -
Ssu5g0143 486 Gene3D MFS general substrate transporter like domains 40 486 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0143 Ssu-Chr5 2892200 2896978 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0143 5 2892200 2896978 Ssu5g0143 5 2892200 2896978 ECH