Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0124 ATGGATGCTACTATTGCAACCCTGAATGCCAGTGCTAATCTAGCTACTAAGGGAATTGGAAGAAATAGAAGTTCTGGGTTCTGGGGTGAGAACACAAGGGGAAGTCTTAACGTCAGATTTTGTAGTACTCAATCATGCAAGAGTTCAAAAACTAGAAGTTTCAAGTCTGGCTTTGCATGCGCTGTTTACACACCAGATGTGAACAAAGATTCTCCGGTATTGCAGGGACCCATTTTTCAGAGTCTAAAAGCAAATCCAGACAATGTAGCTGCGATCATATTGGGTGGTGGTGCTGGAACTCGACTCTTTCCTCTTACTAGCAGAAGAGCTAAGCCCGCTGTTCCAATTGGGGGATGTTACAGACTTATAGATATTCCTATGAGCAATTGCATCAACAGTGGCATCAGAAAAGTGTACGTTTTAACACAGTACAACTCTTTCTCCCTCAATGGCCACTTGTCTCGCacatataattttggaaatggCGTGAACTTTGGAGGTGGTTTTGTGGAGGTCTTGGCTGCTACTCAAACTCCTGGAGAGGCTGGGAAAAAATGGTTCCAAGGGACAGCTGATGCAGTGAGACGATTTATTTGGGTTTTTGGGGATGCCAAGAACAAGAATATTGAGCACATATTGATAATTTCTGGTGATCATCTTTGCCGGATGGACTATATGAAGCTTGTGGAGTTATCTAGCAGTCTTGCATCAGACTATGGGCTGATGAAAATTGATAGAAAGGGACGGATTACGCAGTTTGTAGAAGAACAAACAGCATCAGATGTGAAGGCAATGCGTGTTGATACCACTCTCCTAGGCTTAACTGCAGAAGAAGCACAGAAATATCCTTACATTGCACCTATGGGTGTTTCTGTATTCAGAACTGAGACCCTGCTGAAACTGTTAAGATGGAGCTGTCCTTCTTGCAATGACTTTGGATCTGAAATTATCCCATCCGCTTTGAGGGACCACAAAGTCCAATCATATTTGTTCAGGGACTACTGGAAAGATATTGGAACCATAAAGTCCTTCTTTGAAGCGAATCTGGCGCTGACAGAACAGtctccaaaatttgaattctatGATCCAGAGACGCCTTTCTTCACTTCCCCAAGATTCCTACCACCCACTAAAGCAACAAAATGCAAGATTGTGGAGGCAATTATTTCTCATGGTTGCTTCTTGAGTGAGTGTAGAGTTCAACGATCTATTGTTGGTGTGCGCTCACGTTTAGAGTCTGGCTCAGAGCTTCAGGATACCATGATGATGGGTGCTGACTACTATCAAACTGATTCTGAAATTACATATCTGCTGACAGAAGGAAAGGTTCCAGTTGGTGTTGGAGAGAATACCAAAATCAGgaattgtATAATCGACAAGAATGCCAAGATAGGAAGAAATGTGATTATTACCAATGCTGATGATGTTCAAGAAGCAGACAGGCCTACGGAAGGATTCTACATTAGATCGGGCATCGTAGTTATACTGAAGAATGCAACAATTAAAGATGGAACAGTCATTTGA 1524 0.4154 MDATIATLNASANLATKGIGRNRSSGFWGENTRGSLNVRFCSTQSCKSSKTRSFKSGFACAVYTPDVNKDSPVLQGPIFQSLKANPDNVAAIILGGGAGTRLFPLTSRRAKPAVPIGGCYRLIDIPMSNCINSGIRKVYVLTQYNSFSLNGHLSRTYNFGNGVNFGGGFVEVLAATQTPGEAGKKWFQGTADAVRRFIWVFGDAKNKNIEHILIISGDHLCRMDYMKLVELSSSLASDYGLMKIDRKGRITQFVEEQTASDVKAMRVDTTLLGLTAEEAQKYPYIAPMGVSVFRTETLLKLLRWSCPSCNDFGSEIIPSALRDHKVQSYLFRDYWKDIGTIKSFFEANLALTEQSPKFEFYDPETPFFTSPRFLPPTKATKCKIVEAIISHGCFLSECRVQRSIVGVRSRLESGSELQDTMMMGADYYQTDSEITYLLTEGKVPVGVGENTKIRNCIIDKNAKIGRNVIITNADDVQEADRPTEGFYIRSGIVVILKNATIKDGTVI 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0124 507 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 95 114 IPR005836 GO:0005978|GO:0008878
Ssu5g0124 507 SUPERFAMILY Nucleotide-diphospho-sugar transferases 88 468 IPR029044 -
Ssu5g0124 507 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC 1 507 - -
Ssu5g0124 507 SUPERFAMILY Trimeric LpxA-like enzymes 370 507 IPR011004 -
Ssu5g0124 507 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 79 372 IPR029044 -
Ssu5g0124 507 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 1 507 IPR011831 GO:0005978|GO:0008878
Ssu5g0124 507 CDD ADP_Glucose_PP 91 338 - -
Ssu5g0124 507 Gene3D Hexapeptide repeat proteins 373 507 - -
Ssu5g0124 507 CDD LbH_G1P_AT_C 375 501 - -
Ssu5g0124 507 Pfam Nucleotidyl transferase 91 353 IPR005835 GO:0009058|GO:0016779
Ssu5g0124 507 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 186 194 IPR005836 GO:0005978|GO:0008878
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0124 Ssu-Chr5 2568532 2573360 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0124 5 2568532 2573360 Ssu5g0124 5 2568532 2573360 ECH