Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0119 ATGTCAGGGCCGCTAGATCGGTTCGCACGTCCCTGCTTTGAAGGGTTTTCTGGTCATGATGAAAGGAGGGAGAGGAAATCAGATTTTGAGAATTCAGAAGACGATAGGCGAACGAGGATAGGtagtttgaaaaagaaagcaatCAATGCTTCAAGCAAATTCAGGCATTCTCTTAGGAAGAAAAGCAGCAGGAGAAAGAGCGCGAGTCGAAGCAATTCTGTATCCATTGAGGATGTTCGAGATGTTAAGGAGCTCCAAGCAGTGGAAGCATTTCGACAGGCGCTTATGTTGGATAACTTGTTGCCACCGAGACATCATGATGACTATCATATGTTACTGAGATTCTTGAAAGCAAGGAAATTTGATATTGAGAAAGCAAAGCACATGTGGGCCAACATGATCCAATGGAGGAAAGACTATGGTACTGATACAATTATGGAGGATTTTGAATTCACCGAGTTGAATGAAGTCCTGCAGTACTATCCACATGGTTATCATGGTGTGGATAAGGAAGGAAGACCTGTTTATATTGAGATGTTAGGCAAAGTTGATCCCAATAAGCTTATGCAAGTGACTACCATCGAAAGGTATTTGAGATACCATGTGCAGGGTTTTGAGAAAACGTTTGCTGTTAAGTTTCCTGCATGTTCTATTGCTGCAAAGAGACATATAGATTCAAGTACAACCATTTTGGATGTTCATGGTGTGGGTTTCAAAAACCTAACCAAATCTGCACGGGAACTCATCATGCGGCTGCAGAAAATTGACGGTGACTACTATCCAGAAACATTATGTCGAATGTTTATAATCAATGCTGGCCCCGGTTTTAAGCTGCTTTGGAACACAGTGAAAACATTTCTTGATCCCAAAACTACTTCAAAGATAAATGTTCTTGGAAACAAGTTTCAGAACAAATTACTTGAAATTATTGATGCGAGTGAGCTGCCTGAATTTCTAGGTGGTAGTTGCACTTGTATAGATCAAGGCGGTTGTATGAGCTCTGATAAAGGGCCATGGCGGGATCCAAACATTTTAAAGATGGTTCTTAGTGGTGAAGTGCAATGTTCTAGACAAATAGTAACGGTTTCTAACGATGAGGGGACTGTGATTGAATGTGATAAGGCATGCTATTCAATGcCGATAAGAAGTAGTGATACATCAACAGCAGAATCAGGATCTGAAGTGGAAGATATCACTTCTCCCAAGGCAAGTGGGAATTATACAAACCCTAGGTTAACTCCTGTCCATGAAGAAGCAAGATTGATTGGTAGGGCTTGTCATTCCAGCGGTTTCTCTGAGTATGATGAGTATGTTCCCATGGTTGACAAGGCCGTTGACCTTGGATGGAAGGAGAAACAAGTAACAACTCAGAACTCACATGGCTCAAAAGAAAATTTCCTATTGAGGGCTGGAAAATCTGGTAGAAACTGTGCATATATCTGGGCTATTATTGTGGGCTTCTTTGTTGCCATCTTTACTATTGCTCGTTCACTAGCATTTCATGTCACCAAGGGAATACATGACACTAAATCTGATTCTTCCCAAAATACACCTAACACGACTGTTGATTCAATAACCAATGAGGAATCTCGTCCCCCGTCACCTGTTCCTAGATTAACGAAGGCAGAACTCATCTCATCTGCTTTGAAACGACTTGGTGAGCTTGAAGAGAAGGTTGACATGCTGCAGTCAAAACCTAATGTGATGCCATATGAGAAAGAGGAGCTGCTGAATGCTGCCGTTTATCGTGTGGATGCATTGGAAGCGGAACTGATAGCTACAAAGAAGGCGTTATACGAAGCTTTGATTAGACAAGAAGAACTTCTGGCATACATAGACAGTCAGGAAAGAAGCAAATTTGAGAAAAAGAAGTTTTGCTGGTGA 1884 0.4119 MSGPLDRFARPCFEGFSGHDERRERKSDFENSEDDRRTRIGSLKKKAINASSKFRHSLRKKSSRRKSASRSNSVSIEDVRDVKELQAVEAFRQALMLDNLLPPRHHDDYHMLLRFLKARKFDIEKAKHMWANMIQWRKDYGTDTIMEDFEFTELNEVLQYYPHGYHGVDKEGRPVYIEMLGKVDPNKLMQVTTIERYLRYHVQGFEKTFAVKFPACSIAAKRHIDSSTTILDVHGVGFKNLTKSARELIMRLQKIDGDYYPETLCRMFIINAGPGFKLLWNTVKTFLDPKTTSKINVLGNKFQNKLLEIIDASELPEFLGGSCTCIDQGGCMSSDKGPWRDPNILKMVLSGEVQCSRQIVTVSNDEGTVIECDKACYSMPIRSSDTSTAESGSEVEDITSPKASGNYTNPRLTPVHEEARLIGRACHSSGFSEYDEYVPMVDKAVDLGWKEKQVTTQNSHGSKENFLLRAGKSGRNCAYIWAIIVGFFVAIFTIARSLAFHVTKGIHDTKSDSSQNTPNTTVDSITNEESRPPSPVPRLTKAELISSALKRLGELEEKVDMLQSKPNVMPYEKEELLNAAVYRVDALEAELIATKKALYEALIRQEELLAYIDSQERSKFEKKKFCW 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0119 627 SMART CRAL_TRIO_N_2 108 133 IPR011074 -
Ssu5g0119 627 MobiDBLite consensus disorder prediction 13 42 - -
Ssu5g0119 627 SUPERFAMILY CRAL/TRIO N-terminal domain 83 149 IPR036273 -
Ssu5g0119 627 Pfam CRAL/TRIO, N-terminal domain 107 132 IPR011074 -
Ssu5g0119 627 Gene3D - 141 351 IPR036865 -
Ssu5g0119 627 MobiDBLite consensus disorder prediction 1 75 - -
Ssu5g0119 627 Pfam CRAL/TRIO domain 159 321 IPR001251 -
Ssu5g0119 627 MobiDBLite consensus disorder prediction 383 410 - -
Ssu5g0119 627 Coils Coil 545 565 - -
Ssu5g0119 627 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 153 327 IPR001251 -
Ssu5g0119 627 MobiDBLite consensus disorder prediction 507 537 - -
Ssu5g0119 627 MobiDBLite consensus disorder prediction 49 67 - -
Ssu5g0119 627 SUPERFAMILY CRAL/TRIO domain 154 347 IPR036865 -
Ssu5g0119 627 SMART sec14_4 153 324 IPR001251 -
Ssu5g0119 627 MobiDBLite consensus disorder prediction 509 533 - -
Ssu5g0119 627 Gene3D - 24 140 - -
Ssu5g0119 627 PRINTS Cellular retinaldehyde-binding protein signature 111 133 - -
Ssu5g0119 627 PRINTS Cellular retinaldehyde-binding protein signature 280 299 - -
Ssu5g0119 627 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 3 624 - -
Ssu5g0119 627 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 3 624 - -
Ssu5g0119 627 CDD SEC14 154 321 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0119 Ssu-Chr5 2488248 2492760 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0119 5 2488248 2492760 Ssu5g0119 5 2488248 2492760 ECH