Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0118 ATGAGTTCTGTGCAAGGACCAGTTGTGTGCCCCTCTGTCTGTGCCAAACAAGCAGGGTTCTGCAGCGTTCCTATGATTGGGGCAGTGAAAATGAACGTTAGACGCATTAGAAGTGAATTTTGGGGTCTCAGTGGCGCCAAGGCTAAACCCGGTTTTCTTTCTTGCCATATAAACACTCGAAAGTGCAAGACTGTGCATTGTAGTTTTAACTCACCCTCGAATGACAGCGGGAGTACCGCGGATAATTTCAATGAAAAAGATGAGGATTATGTTAACTCTAGTGTGATTGAAGCTGTTGAGGTGAAGAGTGGAGCAGATGGTTTCATAATCAAAATGAGGGATGGAAGACACTTAAGATGCGTCCATAACAATCCTCAGGGAGGACATCTTCCAGATTATGCACCGCATCCTGCTATTGTACTGAAGATGGAAGATGGGACTGGTCTACTTCTCCCTATAATTGTTTTGGAGATGCCAGGCGTCTTGCTAATGGCAGCAATACGCAATGTTCCCATAGCTAGACCTACTTTATATCAAGTAGTAAAGGAGATGATTGACAAGATGGGTTACGAAGTCAGACTTGTCAGAGTTACCAGGAGAGTTCATGAGGCATACTTTGCCCAGTTGTATCTTACCAAGGTTGGAAATGAGGCAGAATGTGTGAGCTTTGATCTTCGGCCTTCAGACGCTATCAATATTGCAGTAAGATGCAAgGTTCCGATACAAGTGAACAAGTACCTGGCATACAGTGATGGTATGAGAGTAATTGAATCAGGCAAATTGTCAACACAGTTCCCTGGTTTGGATGGACGATTATTTACTGAAATGGACCGGCCAAGTGGTCAACCTTGTGCTGAGACCACGGAGTTCAATCTTTTGCACAACATGTTGAAAGCTGTTGTTGAAGAGCGCTATAAAGATGCTGCTTTGTTCAGGGACAAACTTAATCAACTTAGGGCGGGAAAAAACGTAAATAACAGGTATGGAGCTTATTTGATATGA 1002 0.4351 MSSVQGPVVCPSVCAKQAGFCSVPMIGAVKMNVRRIRSEFWGLSGAKAKPGFLSCHINTRKCKTVHCSFNSPSNDSGSTADNFNEKDEDYVNSSVIEAVEVKSGADGFIIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPGVLLMAAIRNVPIARPTLYQVVKEMIDKMGYEVRLVRVTRRVHEAYFAQLYLTKVGNEAECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTQFPGLDGRLFTEMDRPSGQPCAETTEFNLLHNMLKAVVEERYKDAALFRDKLNQLRAGKNVNNRYGAYLI 333
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0118 333 SUPERFAMILY Hypothetical protein TM0160 120 258 IPR036104 GO:0004518
Ssu5g0118 333 ProSiteProfiles Bifunctional nuclease (BFN) domain profile. 120 255 IPR003729 GO:0004518
Ssu5g0118 333 PANTHER VON HIPPEL-LINDAU PROTEIN 1 325 - -
Ssu5g0118 333 PANTHER NUCLEASE IN BASAL DEFENSE RESPONSE PROTEIN 1 325 - -
Ssu5g0118 333 Gene3D Bifunctional nuclease domain 126 260 IPR036104 GO:0004518
Ssu5g0118 333 Pfam Bifunctional nuclease domain 139 249 IPR003729 GO:0004518
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu5g0118 Ssu-Chr5 2482007 2485620 Dispersed/Wgd
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0118 5 2482007 2485620 Ssu5g0118 5 2482007 2485620 ECH