Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0115 atGGCCTCATCCAGTGGAACCACCAGCATGTCCACTAAATTTATTCACAGCTCTGGCTCCGAGGAGGATTTGCGGGTTCTGAtggaacaaagaaaaaagaagagaaagcaaTCGAACCGCGAATCAGCCAAAAGATCCCGGATGCGAAAGCAGAAGCACTTGGATGATCTCATTGCACAAGTGGAGCGCCTCAAAAGGGAAAATAGCCTAATCCTCACCAAAGTCAACATCACCACCCTTCACTATCACAAGGTTGAGGCTGAAAACTGCATTCTTAGGGCCCAAAAATGTGAACTTACCCAAAGCCTACAATCACTGAATGATATCATCGACCTCGTCAACACAACCACCGGGCTCTACCAAACCGATTCCTATCTTTCAAGTGCagatcataataataataattattattataattataataatttcatgaaTCCCATGCACATGGCCTATGTTAACCAACCAATTGTGGCTGCCGCGGACATGTTTCACTGGTGA 498 0.4096 MASSSGTTSMSTKFIHSSGSEEDLRVLMEQRKKKRKQSNRESAKRSRMRKQKHLDDLIAQVERLKRENSLILTKVNITTLHYHKVEAENCILRAQKCELTQSLQSLNDIIDLVNTTTGLYQTDSYLSSADHNNNNYYYNYNNFMNPMHMAYVNQPIVAAADMFHW 165
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0115 165 MobiDBLite consensus disorder prediction 1 52 - -
Ssu5g0115 165 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 29 76 IPR004827 GO:0003700|GO:0006355
Ssu5g0115 165 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 163 - -
Ssu5g0115 165 SUPERFAMILY Leucine zipper domain 31 80 IPR046347 GO:0003700|GO:0006355
Ssu5g0115 165 MobiDBLite consensus disorder prediction 18 36 - -
Ssu5g0115 165 Coils Coil 47 74 - -
Ssu5g0115 165 Gene3D - 29 83 - -
Ssu5g0115 165 SMART brlzneu 27 91 IPR004827 GO:0003700|GO:0006355
Ssu5g0115 165 Pfam bZIP transcription factor 30 76 IPR004827 GO:0003700|GO:0006355
Ssu5g0115 165 PANTHER BZIP TRANSCRIPTION FACTOR 1 163 - -
Ssu5g0115 165 MobiDBLite consensus disorder prediction 1 17 - -
Ssu5g0115 165 CDD bZIP_plant_GBF1 32 83 IPR045314 GO:0003700|GO:0006355
Ssu5g0115 165 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 34 49 IPR004827 GO:0003700|GO:0006355
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu5g0115 Ssu-Chr5 2393060 2393557 Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu5g0115 bZIP_1 1.1e-08 CL0018