Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0108 ATGACGGATACCGAAGACGCTACACGACGCCGTAATGCGGTGGCGGAGTACCGTAAGAAACTTCTTCAACAGAAGGAATTGGAATCCAGAGTACGATCGGTCAGAGAGAATTTGCGTGCTTCGAAGAAAGAGTTCAACAAAACAGAAGATGATTTGAAGTCTCTTCAAAGCGTTGGCCAGATCATTGGCGAAGTTCTTAGGCCTCTCGACAATGAACGCTTGATTGTTAAAGCAAGCAGCGGACCCAGGTATGTGGTTGGCTGCCGCAGTAAAGTAGATAAGGAAAAACTGACTGCTGGTACAAGAGTGGTTCTTGATATGACAACACTCACCATAATGCGAGCTCTTCCGCGCGAAGTTGATCCAGTAGTTTACAATATGCTTCATGAGGATCCTGGTAATGTCAGTTACTCTGCTGTTGGTGGTCTATCTGATCAGATAAGGGAATTGAGGGAATCAATTGAATTACCTCTGATGAATCCCGAGCTCTTCCTTCGAGTTGGGATTAAACCTCCTAAGGGTGTTCTCCTTTATGGGCCTCCTGGTACTGGTAAAACATTGTTAGCTAGGGCAATTGCCAGTAACATAGACGCTAACTTCTTGAAGGTTGTTTCAAGTGCAATAATTGATAAGTACATTGGAGAAAGTGCCAGGTTAATTCGAGAAATGTTTGGGTATGCACGTGATCACCAGCCTTGCATCATTTTTATGGACGAGATCGATGCCATTGGTGGTCGTCGTTTCAGTGAGGGAACAAGTGCTGATCGTGAGATTCAGAGAACACTAATGGAGTTGCTTAATCAACTTGATGGGTTTGATCAACTTGGGAAGGTTAAAATGATAATGGCAACAAACCGGCCTGACGTACTGGATCCTGCTCTCCTGCGTCCTGGAAGATtagatagaaaaatagaaattccaTTGCCAAATGAACAATCAAGGATGGAAATTCTTAAGATTCATGCTGCTGGGATTGCTAAGCATGGTGAAATAGATTATGAAGCTGTTGTGAAGCTTGCTGAGGGCTTTAATGGAGCTGATCTTCGAAATGTGTGCACGGAAGCTGGAATGGCAGCAATTCGTGCAGAACGTGATTACGTAATACATGAAGATTTTATGAAGGCTGTTAGAAAACTGAATGAGGCAAAGAAACTTGAATCCAGTGCACACTACAGTGCTGATTTTGGCAAAGactaa 1197 0.4294 MTDTEDATRRRNAVAEYRKKLLQQKELESRVRSVRENLRASKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTAGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMAAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYSADFGKD 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0108 398 ProSitePatterns AAA-protein family signature. 278 296 IPR003960 GO:0005524|GO:0016887
Ssu5g0108 398 Gene3D - 309 379 - -
Ssu5g0108 398 SMART AAA_5 171 310 IPR003593 -
Ssu5g0108 398 Pfam AAA+ lid domain 331 373 IPR041569 -
Ssu5g0108 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 383 IPR027417 -
Ssu5g0108 398 Gene3D - 128 308 IPR027417 -
Ssu5g0108 398 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 4 394 - -
Ssu5g0108 398 Pfam Proteasomal ATPase OB C-terminal domain 62 117 IPR032501 -
Ssu5g0108 398 Pfam ATPase family associated with various cellular activities (AAA) 175 308 IPR003959 GO:0005524|GO:0016887
Ssu5g0108 398 Gene3D - 23 127 IPR012340 -
Ssu5g0108 398 PANTHER BNAC02G30020D PROTEIN 4 394 - -
Ssu5g0108 398 CDD AAA 141 308 - -
Ssu5g0108 398 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 22 379 IPR005937 GO:0005737|GO:0030163|GO:0036402
Ssu5g0108 398 Coils Coil 24 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0108 Ssu-Chr5 2324601 2327524 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0108 5 2324601 2327524 Ssu5g0108 5 2324601 2327524 ECH