Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0105 ATGGAACATACAATCACCAAAATTAACAAGCTCTCCAACTCAGTTGCCACACTTGTCACCATGCCTTTCATCAAAGTCACTCTTCTTGTAATAATAGCTTTCCTCTCAGTTAAACTCTCTCTGGCCCACCCTGGCTTCCATTTTGGCTGGGGTGGTCATGGGGGGATATCTTCTGGCCTTTCACCTCAATTCTACCAGTTTTCATGCCCTCAAGCTAATGACATTGTCATGTCAGTGTTGGAAAAGGCCATTGCACAGGACATGAGAATGGCTGCTTCTCTACTTAGACTTCACTTTCACGATTGCTTCGTGCAGGGCTGTGATGCATCAATTTTGTTGGATGATAGCGCAACAATAGTCAGTGAAAAAAGTTCTGGACCTAACAAAAATTCCGTCAGAGGTTTCGAAGTGATTGATGAGATCAAATCTAAGTTGGAAAAGGCATGTCCTCAGACTGTCTCCTGTGCAGACATTCTTGCCCTTGCTGCCAGGGGCTCCACTGTTCTTAGTGGAGGACCCAACTGGGAGCTCCCATTAGGCAGAAGAGACTCAAAAACAGCAAGCCTAAGCGGGTCAAACAAAAACATTCCCCCACCAAATGCCACCATTGAAAATCTCCTGACATTTTTCATGCGCCAAGGCCTTGATGAAGTGGACCTTGTTGCCCTGTCAGGTGCGCATACCATTGGGGTGGCAAGATGTGCCACATTCAAGCAGAGACTATACAACCAAAACGGAAACAACCAACCGGATGAGAATCTAGAAAAATCCTTTTACTTTGATTTGAAGACAATGTGCCCAAAATCAGGTGGTGACAACTTGATTTCTCCCTTGGACTTTGGCTCCCCAAGAATGTTTGATAACACCTATTTCAAGCTCATACTTAGGGGAAAAGGACTACTTAATTCAGACCAAGTGCTTCTCATGGGAAATGTTAAGGAAACTCGTGAACTGGTCGAGAACTATGCACAGGATGAGAGCCTCTTCTTTGAGCAATTTGCCATGTCCATGATCAAGATGGGGAACCTCCGTCCTCTCACTGGATTTAATGGTGAAGTTAGGAAGAATTGTCGCcgagttaattaa 1086 0.4448 MEHTITKINKLSNSVATLVTMPFIKVTLLVIIAFLSVKLSLAHPGFHFGWGGHGGISSGLSPQFYQFSCPQANDIVMSVLEKAIAQDMRMAASLLRLHFHDCFVQGCDASILLDDSATIVSEKSSGPNKNSVRGFEVIDEIKSKLEKACPQTVSCADILALAARGSTVLSGGPNWELPLGRRDSKTASLSGSNKNIPPPNATIENLLTFFMRQGLDEVDLVALSGAHTIGVARCATFKQRLYNQNGNNQPDENLEKSFYFDLKTMCPKSGGDNLISPLDFGSPRMFDNTYFKLILRGKGLLNSDQVLLMGNVKETRELVENYAQDESLFFEQFAMSMIKMGNLRPLTGFNGEVRKNCRRVN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0105 361 PRINTS Plant peroxidase signature 171 186 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g0105 361 PRINTS Plant peroxidase signature 69 88 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g0105 361 PRINTS Plant peroxidase signature 133 146 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g0105 361 PRINTS Plant peroxidase signature 218 230 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g0105 361 PRINTS Plant peroxidase signature 277 292 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g0105 361 PRINTS Plant peroxidase signature 93 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g0105 361 PRINTS Plant peroxidase signature 152 162 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g0105 361 PRINTS Plant peroxidase signature 293 310 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g0105 361 PRINTS Plant peroxidase signature 335 348 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g0105 361 PANTHER PEROXIDASE 72-RELATED 34 360 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g0105 361 CDD secretory_peroxidase 59 360 IPR033905 GO:0004601|GO:0042744
Ssu5g0105 361 PANTHER PEROXIDASE 34 360 - -
Ssu5g0105 361 Gene3D Peroxidase, domain 2 197 341 - -
Ssu5g0105 361 Gene3D - 64 361 - -
Ssu5g0105 361 SUPERFAMILY Heme-dependent peroxidases 59 361 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu5g0105 361 ProSiteProfiles Plant heme peroxidase family profile. 59 361 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu5g0105 361 ProSitePatterns Peroxidases proximal heme-ligand signature. 219 229 IPR019793 -
Ssu5g0105 361 PRINTS Haem peroxidase superfamily signature 91 105 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu5g0105 361 PRINTS Haem peroxidase superfamily signature 171 183 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu5g0105 361 PRINTS Haem peroxidase superfamily signature 279 294 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu5g0105 361 PRINTS Haem peroxidase superfamily signature 219 234 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu5g0105 361 PRINTS Haem peroxidase superfamily signature 153 170 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu5g0105 361 Pfam Peroxidase 78 325 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu5g0105 361 ProSitePatterns Peroxidases active site signature. 91 102 IPR019794 GO:0004601
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0105 Ssu-Chr5 2309314 2311234 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0105 5 2309314 2311234 Ssu5g0105 5 2309314 2311234 ECH