Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0104 ATGAGTGGAACATTCCTCTACGGTTCGGTTATTCACCCATCATCAGTGATTCAACAACGCTACCATTATTTATCTCCACCAATCCCTATTCGCCCCTTATGCCTATCCCCTCTCACCACCACAATCGCTTCCTCCACCTCAATCCTCACCACCTCCGTCCTCCAACGCGATTCTGCACTTGAACTCGCGTCATCGTCCATTGACTCCAACGATGCCGTTTCGTCGCAAAACGGAACGGATCAGTTGGAGACAGAGCGACACAGCGAAGAAGCGGTTCCGCCACTCCCTGCCGAAGACAAAGGAACGAGGCTtcggaagaagaaagaagacgACGCCGTTTCCGATAACCGCTACAAGCTCCGCAACGGAAGAGAGgtttttgaagaaaaagcgTACCTCGTAGGCGTTGAGCGCAAGAACGATGTTCAGGATTTTGGAATTGAAGAATCTCTGAGCGAATTGGCACAGTTAGCTGACACTGCTGGATTATTCGTTGTTGGCTCTACATACCAgaaGCTTACTTCTCCAAACCCTAGGACATACATTGGCTCTGGCAAGGTTTCTGAAATTAAGAGTGCAATTCATGGATTGGGCGTTGAAACTGTTATCTTTGATGATGAGCTGTCAGCTGGGCAATTGCGCAACTTGGAAAAGATTTTTGGTGGAGATGTGAGAGTTTGCGATCGAACCGCTCTCATCCTTGATATATTTAATCAACGAGCAGCAACACATGAAGCGTCTTTACAGGTTTCATTAGCACAAATGGAATACCAACTACCTCGTCTAACAAAAATGTGGGCTCATCTTGAGCGTCAAGCAGGAGGAAAGGTCAAGGGAATGGGTGAAAAACAAATAGAAGTGGACAAGCGTATTCTGCGTAACCAAATTGGTATTCTTAAAAAAGAGCTAGAATCTGTTAGGAAACACCGAAAGCAGTACCGTAACAGGCGTTTCTCAGTACCTGTGCCAGTGGTATCCTTGGTTGGTTACACAAATGCTGGTAAGAGTACACTTTTGAATCAACTAACTGGAGCAGATGTTCTTGCTGAGGATAAATTATTTGCAACTTTAGATCCAACTACGAGGAGGGTACAGATGAAGAATGGAAAGGAGTTTCTCCTAACAGACACTGTTGGTTTTATTCAGAAGTTACCTACAACACTAGTTGCTGCCTTCAGAGCTACGCTGGAGGAGATATCTGAGTCATCACTCTTGGTGCATGTGATTGATATCAGTCATCCCCTGGCTGAGCAACAGATAAATGCTGTGAACAAAGTCCTGTCAGAACTAGATGTATCATCAATTCCAAAATTGATGGTTTGGAACAAGGTTGATAAAGTTAGCGATCCCCAGAAACTCAGGCTAGAAGCTGAAAAAAGAGATGATGTTGTATGCATATCTGCTTTAAGTGGTGATGGCTTACAAGAATTTTGTAATGCAGTTCAAGACAAGCTAAAGGACTCCATGGTTTGGGTGGAAGCTTTGGTCCCATTTGAAAATGGGGACCTTCTCAGCACCATACACCAGGTTGGAATGGTTGAAAAAACTgaaTATACAGAGCAAGGGACATATATCAAGGCACATGTGCCCCTGCGTTTTGCAAGAATGCTTACACCCATGAGGCAACTGTGCATATCGCGACCTTAA 1647 0.4372 MSGTFLYGSVIHPSSVIQQRYHYLSPPIPIRPLCLSPLTTTIASSTSILTTSVLQRDSALELASSSIDSNDAVSSQNGTDQLETERHSEEAVPPLPAEDKGTRLRKKKEDDAVSDNRYKLRNGREVFEEKAYLVGVERKNDVQDFGIEESLSELAQLADTAGLFVVGSTYQKLTSPNPRTYIGSGKVSEIKSAIHGLGVETVIFDDELSAGQLRNLEKIFGGDVRVCDRTALILDIFNQRAATHEASLQVSLAQMEYQLPRLTKMWAHLERQAGGKVKGMGEKQIEVDKRILRNQIGILKKELESVRKHRKQYRNRRFSVPVPVVSLVGYTNAGKSTLLNQLTGADVLAEDKLFATLDPTTRRVQMKNGKEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVIDISHPLAEQQINAVNKVLSELDVSSIPKLMVWNKVDKVSDPQKLRLEAEKRDDVVCISALSGDGLQEFCNAVQDKLKDSMVWVEALVPFENGDLLSTIHQVGMVEKTEYTEQGTYIKAHVPLRFARMLTPMRQLCISRP 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0104 548 Gene3D - 140 240 IPR042108 -
Ssu5g0104 548 Pfam HflX C-terminal domain 455 523 IPR045498 -
Ssu5g0104 548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 323 495 IPR027417 -
Ssu5g0104 548 CDD HflX 282 485 IPR030394 GO:0005525
Ssu5g0104 548 Gene3D - 322 490 IPR027417 -
Ssu5g0104 548 Hamap GTPase HflX [hflX]. 151 514 IPR016496 GO:0005525
Ssu5g0104 548 Gene3D - 241 308 - -
Ssu5g0104 548 MobiDBLite consensus disorder prediction 65 110 - -
Ssu5g0104 548 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 323 489 IPR030394 GO:0005525
Ssu5g0104 548 Pfam GTP-binding GTPase Middle Region 240 317 IPR032305 -
Ssu5g0104 548 TIGRFAM small_GTP: small GTP-binding protein domain 324 479 IPR005225 GO:0005525
Ssu5g0104 548 MobiDBLite consensus disorder prediction 82 110 - -
Ssu5g0104 548 Pfam 50S ribosome-binding GTPase 325 443 IPR006073 GO:0005525
Ssu5g0104 548 PANTHER GTP-BINDING PROTEIN 6-RELATED 98 533 - -
Ssu5g0104 548 TIGRFAM GTP_HflX: GTP-binding protein HflX 130 484 IPR016496 GO:0005525
Ssu5g0104 548 Pfam GTP-binding GTPase N-terminal 148 237 IPR025121 -
Ssu5g0104 548 MobiDBLite consensus disorder prediction 65 81 - -
Ssu5g0104 548 Coils Coil 296 316 - -
Ssu5g0104 548 PRINTS GTP1/OBG GTP-binding protein family signature 392 410 IPR006073 GO:0005525
Ssu5g0104 548 PRINTS GTP1/OBG GTP-binding protein family signature 325 345 IPR006073 GO:0005525
Ssu5g0104 548 PANTHER GTP-BINDING PROTEIN HFLX 98 533 IPR016496 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0104 Ssu-Chr5 2298134 2306803 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0104 5 2298134 2306803 Ssu5g0104 5 2298134 2306803 ECH