Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0103 ATGTATCCGAACCAAGCCTTTTCTTCGGGGTCCTATGCGGGGATGTTGTCTGGGAATCCTCTGTTACCTCATAACTACAGTGAATCTGTAGGAGGACAAAATGAGTTGAAGTTCATCACGTCCATGGGGGACACAGTGACTATGCAGCCTATGGATGGGCATTCCAATGCCTCTGCCATGGGTGATCCGGCATGCAATGCTTTTGCTAATGCTGGAGATTCCCATTCCCATGTTATTCCAAGGACAACACAATTGGGACTTGTGGACAGTGAGCAAAATGTACAGAACCAAGGCTTGTCTCTTAGCCTTGGGACAGTGATGCCTTCTATTGCATCTGTCCCTGCCTTTCCATATCAGTATCCCGGCACCGGTTTCTTTTCACTAATGACTGCTTCTGTCCCTAATTTAAAAGGCTCTTCATCTCTTAAAGATGATGAGGCCAGCCTACAAAGGGAATTGAGAAATGCTGAGTGCATGGCATCTTTAGCTTCTGGTGGATTTCACAAAAGGGAGGGTTTGTATAATCCACAACCCTCAATGTGCCTTAGTGAAGGCCAAAGTGATGGATCACAAGGTTTTTCCAACAGTACCTTGAACTCACAATACCTCAAGGCAGTACAGGAGTTGCTGGATGAAATAGTTAATGTCCGAAAGGCTTTGAAGCAAACTGGTTTGGAAAAGCAACAGAGTTTCCGAGACGTTGGTATGGACGGCTCCAAAGATTCTGATGGAAAATCTACAAGCCAATCGGTGCAAATATCTTCAGGCCTCAATGGTTCTGCCACAAACGCTTCATGTGAGCTATCACCTGCAGAACGGCAGCATTTGTTGGACAAGAAGACAAAACTTTTGTCTATGTTAGATGAGGTAGATAAAAGATACCGACAGTACTGCCATCAGATGCAGATTGTGGTGTCATCTTTTGATATGGTTGCTGGGTGTGGAGCAGCTGAACCATACACTGCACTTGCCTTGCGCACAATATCGCGCCACTTTCGGTGTTTGCGTGATGCCATTAGCGGCCAAATTCAAGTGACTCAAAGGACCCTTGGAGAACAAGAGGGAATACCTCGTCTCCGCTATGTTGATCAGCAGCTTCGGCAACAAAAGGCCCTTCAGCAACTTGGTGTAATGCGACAAGCTTGGAGGCCGCAGAGAGGACTTCCTGAAAACTCTGTTTCAATACTCCGTGCATGGCTTTTTGAGCATTTCCTTCATCCTTATCCAAAGGATTCCGAGAAAATTATGCTGGCACGGCAAACCGGCTTAACAAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGACTTTGGAAGCCAATGGTTGAAGAAATGTACAAAGAAGAATTTGGTGATTCTGAGATGAGCAGCAATCTATTATCATCAGAGAGCACACTGAAAGCTCCTAGAGATGATGTTCAAGCTTCTGACAATAAAAGAGAAGAGTCCCAGGAAAACTTAGTAACACTTGATAGTGTTCAGCATCATGGGATGAAGTTGGATCATGCCGCAGAGTTGGACAGAGGGATCCAAAGTAGTGATCATGGAGAAAATGCCATGGATCCTAGAATTAGGAAATTGCAAGGTGACCAAAGTTTTAACatgaacaacaacaatagtctTTATTATGGTGATGGCTGCATAATGGCTTCTACTCCTGCCACGTATGATTTATCAGAGTTGGGTAACATTGCCGTGGGCGGCCACGTGTCCCTTGCGTTGGAGTTGAGGAACTGTGAAAGTGAAGGATTTGGTGTGTCCAATGATGACATGCACAAAAGACGTAAGAAGACATTGGCTTCTGCCCCAGAGGCTGATTTGCTAGATTACCATTTCACAGACCCAGGAAAGCAACAAAACAAGTTTGGCAATCCTCATCTATTACACGAGTTTGTTGTCTGA 1908 0.4471 MYPNQAFSSGSYAGMLSGNPLLPHNYSESVGGQNELKFITSMGDTVTMQPMDGHSNASAMGDPACNAFANAGDSHSHVIPRTTQLGLVDSEQNVQNQGLSLSLGTVMPSIASVPAFPYQYPGTGFFSLMTASVPNLKGSSSLKDDEASLQRELRNAECMASLASGGFHKREGLYNPQPSMCLSEGQSDGSQGFSNSTLNSQYLKAVQELLDEIVNVRKALKQTGLEKQQSFRDVGMDGSKDSDGKSTSQSVQISSGLNGSATNASCELSPAERQHLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRTLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMSSNLLSSESTLKAPRDDVQASDNKREESQENLVTLDSVQHHGMKLDHAAELDRGIQSSDHGENAMDPRIRKLQGDQSFNMNNNNSLYYGDGCIMASTPATYDLSELGNIAVGGHVSLALELRNCESEGFGVSNDDMHKRRKKTLASAPEADLLDYHFTDPGKQQNKFGNPHLLHEFVV 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0103 635 MobiDBLite consensus disorder prediction 230 259 - -
Ssu5g0103 635 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677|GO:0006355
Ssu5g0103 635 MobiDBLite consensus disorder prediction 456 471 - -
Ssu5g0103 635 MobiDBLite consensus disorder prediction 472 487 - -
Ssu5g0103 635 SMART prehox3 191 341 IPR006563 -
Ssu5g0103 635 MobiDBLite consensus disorder prediction 455 487 - -
Ssu5g0103 635 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 28 596 - -
Ssu5g0103 635 Coils Coil 203 223 - -
Ssu5g0103 635 MobiDBLite consensus disorder prediction 241 259 - -
Ssu5g0103 635 SUPERFAMILY Homeodomain-like 383 449 IPR009057 -
Ssu5g0103 635 CDD homeodomain 382 443 IPR001356 GO:0003677
Ssu5g0103 635 Coils Coil 139 159 - -
Ssu5g0103 635 SMART HOX_1 382 446 IPR001356 GO:0003677
Ssu5g0103 635 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 28 596 - -
Ssu5g0103 635 Pfam Associated with HOX 198 340 IPR006563 -
Ssu5g0103 635 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677
Ssu5g0103 635 Gene3D - 379 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0103 Ssu-Chr5 2281692 2284825 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Ssu5g0103 POX 1.1e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0103 5 2281692 2284825 Ssu5g0103 5 2281692 2284825 ECH