Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0102 atgtcTTCCTTTTCTTCCAACTTTTATGTTCTGTTTGAAGCTTGTGTTTCTGAGTTGTTTGTTTTGAAATGCGTGTTGTTATTGTTGCAGATGTGGGAGGACCTAATTCGGAAGGCAAAAGATGGAGGCCTTGATGTTATCGACACTTATGTCTTCTGGAATGTTCATGAACCATCTCCTGGCAATTACAATTTTGAAGGGAGGTACGATCTGGTACGGTTCATTAAGACTGTGCAGAGGGAGGGGCTCTATGTCCATCTTCGCATTGGACCTTATGTGTGCGCTGAGTGGAACTTTGGAGGATTTCCTGTTTGGTTGAAGTATGTTCCTGGCATCAACTTCAGAACAGATAATGGCCCTTTCAAGGCTGCAATGCAAGGTTTCACTCAGAAAATAGTCCAGATGATGAAGAATGAAAAGCTATTTCAGTCTCAGGGTGGTCCAATCATTCTTTCTCAGATTGAGAATGAATATGGACCAGAAAGCAGGGCACTGGGAGCTGCTGGTCATGCATACACAAACTGGGCTGCAAAGATGGCTGTTGGATTGGGTACAGGAGTCCCCTGGGTGATGTGCAAGCAAGATGATGCCCCAGATCCAGTGATAAATACATGCAATGGTTTTTATTGTGATGACTTCTCTCCAAATAAACCATACAAGCCTAGCCTTTGGACCGAATCTTGGAGTGGCTGGTTTACAGAATTTGGTGGTCCAATTTACCAGCGACCAGTTCAGGATCTAGCTTTTGCAGTTGCTCGTTTCATACAAAAGGGTGGCtcatatttcaattattacatGTACCATGGAGGAACTAATTTTGGACGATCAGCTGGAGGGCCATTCATTACTACAAGCTATGACTATGATGCTCCAATTGATGAATATGGTTTGATCAGGGAACCTAAATATGGTCATTTGAAGGACCTTCATAAAGCTATTAAGCAATGTGAACATGCTTTGGTTTCTTCAGATCCCACTGTTACATCATTAGGAACATATCAACAGGCTCATTTGTTCTCTTCAAGAAATGGAGCATGTGCAGCTTTTCTAGCCAACTACCATTCGAATTCTGCTGCAAGAGTGATGTTCAATAACAGGAACTATGACTTGCCTCCTTGGTCCATAAGCATCCTCCCTGATTGTAGAGCAGATGTATTTAACACTGCAAGAGTGAGGTTTCAAACTTCACAGATACAAATGTTGCCTAGCAATTCTAAGTTGTTCTCATGGGAGACTTATGACGAAGATGTATCTTCGCTAGCAGAAAGTTCCAAGATTACAGTTTCTGGACTATTAGAACAGATCAACGCTACCAGAGACACTAGTGACTATCTATGGTATATAACCAGTGTTGAAATAAGTTCGTCAGAATTGTTTCTTAGAGGAGGGAACAAGCCCAGCATTAGTTTGCATTCTGCAGGCCATGCTGTCCATGTGTTTATTAATGGGAAATTTTCAGGCTCCGCTTTTGGGACAGGGGAAGACAGAAGTTGCACATTTAATGGCCCTGTCAACCTACGTGCTGGAACTAATAAAATAGCACTTCTTAGTGTAGCTGTTGGATTACCCAATGTTGGATTCCATTTTGAAACATGGAAGGCTGGGATCACTGGAGTTTTGCTTCATGGTCTTGACCACGGACTGAAAGATTTGACTTGGCAAAAGTGGTCATACCAGATTGGCCTAAAAGGAGAGGCTATGAATTTGGTGTCTCCCAATGGGGTCTCATCTGTTGACTGGGTCAGAGATTCACTAGCTGCCGGGAGCCAGTCGCAGTTGAAATGGCACAAGGCTTATTTCAATGCACCTGATGGAATTGAACCATTGGCCTTGGACCTGAGTAGTATGGGAAAGGGTCAAGTATGGATCAATGGACAAAGCATAGGAAGATATTGGATGGTTTATGCAAAGGGTGCCTGTAATTCTTGCAACTATGCTGGGACATTCCGGCCTTCGAAGTGCCAACTTGGTTGTGGACAACCTACCCAACGATGGTATCACGTGCCAAGATCCTGGTTAAAGCCAACAAAGAACTTGATAGTAGTTTTTGAGGAATTGGGTGGGAATCCTTGGAAAATAGCTCTGCTAAAAAGGACAATACATACTCCAGCAACTAGTGAACCCGATTCAAAGAACTGA 2139 0.4273 MSSFSSNFYVLFEACVSELFVLKCVLLLLQMWEDLIRKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKTVQREGLYVHLRIGPYVCAEWNFGGFPVWLKYVPGINFRTDNGPFKAAMQGFTQKIVQMMKNEKLFQSQGGPIILSQIENEYGPESRALGAAGHAYTNWAAKMAVGLGTGVPWVMCKQDDAPDPVINTCNGFYCDDFSPNKPYKPSLWTESWSGWFTEFGGPIYQRPVQDLAFAVARFIQKGGSYFNYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLIREPKYGHLKDLHKAIKQCEHALVSSDPTVTSLGTYQQAHLFSSRNGACAAFLANYHSNSAARVMFNNRNYDLPPWSISILPDCRADVFNTARVRFQTSQIQMLPSNSKLFSWETYDEDVSSLAESSKITVSGLLEQINATRDTSDYLWYITSVEISSSELFLRGGNKPSISLHSAGHAVHVFINGKFSGSAFGTGEDRSCTFNGPVNLRAGTNKIALLSVAVGLPNVGFHFETWKAGITGVLLHGLDHGLKDLTWQKWSYQIGLKGEAMNLVSPNGVSSVDWVRDSLAAGSQSQLKWHKAYFNAPDGIEPLALDLSSMGKGQVWINGQSIGRYWMVYAKGACNSCNYAGTFRPSKCQLGCGQPTQRWYHVPRSWLKPTKNLIVVFEELGGNPWKIALLKRTIHTPATSEPDSKN 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0102 712 Pfam Beta-sandwich domain in beta galactosidase 320 391 IPR041392 -
Ssu5g0102 712 Gene3D - 581 704 - -
Ssu5g0102 712 SUPERFAMILY Galactose-binding domain-like 375 538 IPR008979 -
Ssu5g0102 712 PRINTS Glycosyl hydrolase family 35 signature 87 106 IPR001944 GO:0004553|GO:0005975
Ssu5g0102 712 PRINTS Glycosyl hydrolase family 35 signature 618 634 IPR001944 GO:0004553|GO:0005975
Ssu5g0102 712 PRINTS Glycosyl hydrolase family 35 signature 280 296 IPR001944 GO:0004553|GO:0005975
Ssu5g0102 712 PRINTS Glycosyl hydrolase family 35 signature 144 159 IPR001944 GO:0004553|GO:0005975
Ssu5g0102 712 PRINTS Glycosyl hydrolase family 35 signature 32 50 IPR001944 GO:0004553|GO:0005975
Ssu5g0102 712 PRINTS Glycosyl hydrolase family 35 signature 223 238 IPR001944 GO:0004553|GO:0005975
Ssu5g0102 712 PRINTS Glycosyl hydrolase family 35 signature 260 275 IPR001944 GO:0004553|GO:0005975
Ssu5g0102 712 PRINTS Glycosyl hydrolase family 35 signature 591 605 IPR001944 GO:0004553|GO:0005975
Ssu5g0102 712 SUPERFAMILY (Trans)glycosidases 29 317 IPR017853 -
Ssu5g0102 712 PANTHER BETA-GALACTOSIDASE RELATED 28 705 IPR001944 GO:0004553|GO:0005975
Ssu5g0102 712 Gene3D Glycosidases 27 317 - -
Ssu5g0102 712 SUPERFAMILY Galactose-binding domain-like 554 695 IPR008979 -
Ssu5g0102 712 PANTHER BETA-GALACTOSIDASE 28 705 - -
Ssu5g0102 712 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 146 158 IPR019801 GO:0004553|GO:0005975
Ssu5g0102 712 Pfam Glycosyl hydrolases family 35 30 312 IPR031330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0102 Ssu-Chr5 2232087 2237100 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0102 5 2232087 2237100 Ssu5g0102 5 2232087 2237100 ECH