Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0101 ATGGCGGACTTAGAGGGACAGGTCATCGGCGTCCGCACTGTGGAGTCGTGGAAGCAGCAGCTCGAGAGGGGAAAGGAGTCCAACAAACTGATTGTGGTAGATTTTACTGCTTCCTGGTGTGGTCCATGCCGTTTTATTGCCCCAGTTCTGGCAGAGATTGCTAGGAATACACCTGAAGCGATCTTCCTCAAGGTGGATGTGGATGAACTGAGGACTGTTGCTGAGGAATGTTCCATTGAGGCTATGCCAACCTTCCTCTTCTTCAAAGAAGGCAAGCTCGTGGACAAGGTTGTGGGTGCTAAGAGGGAAGAGCTGCAACTGACTGTAACGAAGCATGTATCTGTTGCTGCTGCTTGA 357 0.5098 MADLEGQVIGVRTVESWKQQLERGKESNKLIVVDFTASWCGPCRFIAPVLAEIARNTPEAIFLKVDVDELRTVAEECSIEAMPTFLFFKEGKLVDKVVGAKREELQLTVTKHVSVAAA 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0101 118 Pfam Thioredoxin 12 109 IPR013766 -
Ssu5g0101 118 ProSiteProfiles Thioredoxin domain profile. 1 114 IPR013766 -
Ssu5g0101 118 ProSitePatterns Thioredoxin family active site. 32 50 IPR017937 -
Ssu5g0101 118 Gene3D Glutaredoxin 2 117 - -
Ssu5g0101 118 SUPERFAMILY Thioredoxin-like 5 112 IPR036249 -
Ssu5g0101 118 CDD TRX_family 19 104 - -
Ssu5g0101 118 PANTHER THIOREDOXIN 5 114 - -
Ssu5g0101 118 PANTHER THIOREDOXIN 5 114 - -
Ssu5g0101 118 PRINTS Thioredoxin family signature 31 39 - -
Ssu5g0101 118 PRINTS Thioredoxin family signature 39 48 - -
Ssu5g0101 118 PRINTS Thioredoxin family signature 78 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0101 Ssu-Chr5 2228572 2230475 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0101 5 2228572 2230475 Ssu5g0101 5 2228572 2230475 ECH
Ssu5g0101 5 2228572 2230475 Ssu1g3922 1 97273583 97275132 PCT