Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0098 ATGGCATCTCTAATATCGCCATCACCTTCATCTTGCAACATTCAATTACGCGAAACTCGCTTCTTCTCCACTCTCTTGCTTCCACCAAGGAGCGTCCAATTCCGCCAGAGACGCAACTGCGAAAATTACAAACGGAAAACGGTACGGTGCGGCGCTACCAGCGCCAACGCGTCTCCTCCGCCGTCAGCGTCGTTGACGAAGGAGCCTCACAAGTACTTCGACCACGTAATCATCACCGTTCGCGCGGGAGACGGCGGCCACGGCGCGGTTCTGAACCAGGGAGTAAAACAGGAACATGATAAGGCGAAGAAGAAAGGGAAAGGCTCGCTGAAGAGGGACTTCGACGGGTCCCTCATACTCCCCGTGGGAGGGCACGGAGGTGATGTGGTTATCTATGCGGACGAGGCGAAAGACACGCTGTTGGAGTTTCACAACAAAAGCAGGTATCACGCCAAACGCGGTGGGAACGTTGACGCGATGGGCGTTTTGACGTCGACGCTGCGCGATGGGCTTGCGGCACCGACGCTGCGCATTCCTGTGCCTGTAGGTACAGTTGTGAAAAGCAAACGAGGGAAGATGTTGGCTGATCTAGCACAACCTTGTGATGAAGTTCTTGTTGCGAGGGGAGGACAAGGAGGGATTAGCTTGTTAGAAACTCCACagcataaaaggaaaaagatgatGGCTTTGACAACTAATGTGATGAGAGATGACTCAGATAAGattTTAGTTCATGGTCAACCTGGGGAGGAAGTTAAGTTGGAGTTGATCCTACGAGTTGTTGCTGACGTTGGTCTTGTTGGACTTCCAAATGCTGGGAAATCAACACTTCTGGCAGCCATTACACTTGCAAAACCAGATATTGCTGATTATCCTTTTACAACATTAATGCCAAATCTTGGACGCCTTGGTGGTGATCCCAGCTTGGGGGCAGGAATGTATTCATCTGAAGCTACATTAGCAGATTTACCTGGTCTTATAGAAGGTGCTCACTTAGGAAAgGGTCTGGGTCGCAATTTCTTGAGGCACCTCAGGAGGACCCGGCTGTTGGTCCATGTTGTTGATGCTGCCACTGAGAATCCTATAAATGACTACAGAACTGTCAGAGAAGAGTTGCGCATGTATAATCCTGAGTACCTTGAACGACCATACGTTGTAATTTTGAATAAGATTGACCTACCAGAGGCAAAGGACAGACTTCCATCATTGACTCAAGAAATTATGAGAATTGGCAATGATGGTACTGCTTCCGAACCAAAACCAAGCTCTGAAGTTCCAGCTCAATTGTCTGATGAAACTGACAGGAAGGAAAAAAGACTTGAGGACTATCCACGACCTCTCTCTGTTGTTGGAGTTAGTGTTCTAAAGGGTATCAGGATTAACGAGATGTTAAAGGAGATAAGGTCGGCTTTAAGGAAGTGCTCAGATTCCACTGAAGCATTGGCTTTCAGTGTGCCACCTTAA 1464 0.4788 MASLISPSPSSCNIQLRETRFFSTLLLPPRSVQFRQRRNCENYKRKTVRCGATSANASPPPSASLTKEPHKYFDHVIITVRAGDGGHGAVLNQGVKQEHDKAKKKGKGSLKRDFDGSLILPVGGHGGDVVIYADEAKDTLLEFHNKSRYHAKRGGNVDAMGVLTSTLRDGLAAPTLRIPVPVGTVVKSKRGKMLADLAQPCDEVLVARGGQGGISLLETPQHKRKKMMALTTNVMRDDSDKILVHGQPGEEVKLELILRVVADVGLVGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGRLGGDPSLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAATENPINDYRTVREELRMYNPEYLERPYVVILNKIDLPEAKDRLPSLTQEIMRIGNDGTASEPKPSSEVPAQLSDETDRKEKRLEDYPRPLSVVGVSVLKGIRINEMLKEIRSALRKCSDSTEALAFSVPP 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0098 487 MobiDBLite consensus disorder prediction 411 440 - -
Ssu5g0098 487 CDD Obg 262 400 IPR031167 GO:0005525
Ssu5g0098 487 Gene3D - 261 480 IPR027417 -
Ssu5g0098 487 PRINTS GTP1/OBG GTP-binding protein family signature 320 335 IPR006073 GO:0005525
Ssu5g0098 487 PRINTS GTP1/OBG GTP-binding protein family signature 285 303 IPR006073 GO:0005525
Ssu5g0098 487 PRINTS GTP1/OBG GTP-binding protein family signature 337 355 IPR006073 GO:0005525
Ssu5g0098 487 PRINTS GTP1/OBG GTP-binding protein family signature 264 284 IPR006073 GO:0005525
Ssu5g0098 487 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 43 480 IPR045086 GO:0003924|GO:0005525
Ssu5g0098 487 Pfam 50S ribosome-binding GTPase 263 390 IPR006073 GO:0005525
Ssu5g0098 487 MobiDBLite consensus disorder prediction 411 428 - -
Ssu5g0098 487 ProSitePatterns GTP1/OBG family signature. 322 335 IPR006074 GO:0005525
Ssu5g0098 487 ProSiteProfiles Obg domain profile. 70 261 IPR006169 -
Ssu5g0098 487 Gene3D GTP1/OBG domain 71 260 IPR036726 -
Ssu5g0098 487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 263 472 IPR027417 -
Ssu5g0098 487 SUPERFAMILY Obg GTP-binding protein N-terminal domain 72 225 IPR036726 -
Ssu5g0098 487 Pfam GTP1/OBG 74 259 IPR006169 -
Ssu5g0098 487 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 262 472 IPR031167 GO:0005525
Ssu5g0098 487 PANTHER GTP-BINDING PROTEIN OBGC2-RELATED 43 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0098 Ssu-Chr5 2200198 2205090 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0098 5 2200198 2205090 Ssu5g0098 5 2200198 2205090 ECH