Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0096 ATGGCTGATTTAGGCCCAGCCTCTTCCAAGAGAATGTGGTGTTCCGTTCCCGAAAGAATGCAGCTGCATCTGGCCATGTTGGCCCTGCAGTTTGGCTATGCTGGATTCCACGTCGTCTCAAGAGCTGCACTTAACATGGGCGTTAGCAAGCTTGTTTTTCCTGTCTACCGGAACATCATTGCCTTGCTTCTGCTCCTTCCCTTTGCCTACTTCTTGGAAAAGAAGGAGAGGCCAGCGATGACTTTAAACTTCGTCTGCCAGTTCTTTCTTCTGGCACTTGTCGGGATTACAGCAAACCAAGGTTTCTACTTGATTGGCTTGGAGAACACATCCCCTACCTTCGCATCAGCAATACAAAACTCTGTCCCAGCCATTACATTCCTCATGGCAGCCATATTCAGAATAGAGCAAGTGCGTCTGAACCGAAAAGATGGATTAGCTAAGGTGGCGGGAACCGTGTTGTGTGTGGCTGGGGCCACCGTGATCACACTTTACAAAGGTCCAACAATATATAGCCCAGCAACTCGTGTGAACAGCAGCAACACAAAACCAATGTTTGACTTTGGGTCACTCTCACTGGGAGATGCAAAGGGCAAGAACTGGACCCTAGGATGCCTCTACCTCATTGGGCATTGCTTGTCATGGTCTGGTTGGCTTGTGTTGCAAGCACCAGTCCTCAAGAAGTACCCTGCTCGCCTCTCTGTCACTTCCTACACCTGTTTCTTTGGACTCTTGCAGTTTCTGGTCATTGCTTTGGTCCTTGAAAGAGACGCGCAGGCTTGGCTTTTCCACTCTGGTGCAGAAGCTTTCACAATTTTATACGCGGGAGTGGTGGCATCCGGAATTGCCTTCGCTGTACAGATATGGTGCATTGACAGAGGTGGCCCTGTGTTTGTTGCCGTGTATCAACCTGTTCAGACTTTTGTTGTCGCCATCATGGCTTCCATCGCTTTGGGAGAAGAGTTCTACTTGGGCGGGATCATTGGGGCAGTGTTGATTGTAGGGGGACTGTACCTTGTCTTGTGGGGTAAAAGTGCAGAGAGGAAGATTGCAAGGGATCAGCTTGCAATTGCATCCACTACGGAGCATAGCATCATCAGGCCCGCAAGCCACGCCAAAGCTTCACTTAATCAGCCACTCCTTTCTTCATCAACAGAGAATGTCTGA 1167 0.4953 MADLGPASSKRMWCSVPERMQLHLAMLALQFGYAGFHVVSRAALNMGVSKLVFPVYRNIIALLLLLPFAYFLEKKERPAMTLNFVCQFFLLALVGITANQGFYLIGLENTSPTFASAIQNSVPAITFLMAAIFRIEQVRLNRKDGLAKVAGTVLCVAGATVITLYKGPTIYSPATRVNSSNTKPMFDFGSLSLGDAKGKNWTLGCLYLIGHCLSWSGWLVLQAPVLKKYPARLSVTSYTCFFGLLQFLVIALVLERDAQAWLFHSGAEAFTILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVAIMASIALGEEFYLGGIIGAVLIVGGLYLVLWGKSAERKIARDQLAIASTTEHSIIRPASHAKASLNQPLLSSSTENV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0096 388 Pfam EamA-like transporter family 203 341 IPR000620 GO:0016020|GO:0016021
Ssu5g0096 388 Pfam EamA-like transporter family 24 163 IPR000620 GO:0016020|GO:0016021
Ssu5g0096 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 166 - -
Ssu5g0096 388 PANTHER WAT1-RELATED PROTEIN 14 353 IPR030184 GO:0016021|GO:0022857
Ssu5g0096 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 243 345 - -
Ssu5g0096 388 PANTHER WAT1-RELATED PROTEIN 14 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0096 Ssu-Chr5 2137449 2141185 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0096 5 2137449 2141185 Ssu5g0096 5 2137449 2141185 ECH
Ssu5g0096 5 2137449 2141185 Ssu1g3933 1 97408959 97410241 PCT