Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0095 ATGGCTCGCTACACCCTCTTGGCTCTCCTCCTCTTGGCCGCCGCGGCCACCGCCGCGACGGCCTCGGCATCCGCCGACGACCTCCTGATCCGTCAGGTGGTGCCGGACGGCGAGGCcggggaggaggaggaggagcaCCTGCTGAACGCGGAGCACCACTTCTCGACCTTCAAGGCCAGGTTCGGGAAGAGCTACGCGACGAAGGAGGAGCACGACCACCGCTTCGGCGTGTTCAAGGCGAACCTGCGCAGAGCGAGGCTGCACGCGAAGCTGGACCCCTCCGCCGTCCACGGCGTCACCAAGTTTTCCGATCTCACTCCGGCGGAGTTCCGGCGCCAGTTCCTCGGGCTCAAGCCCCTCCGTCTCCCGGCGCACGCTCAGAAGGCCCCAATCCTCCCCACCAAGGATCTCCCCGAGAATTTCGATTGGCGAGACAAAGGAGCCGTCACTAACGTCAAGGACCAGGGGTCGTGCGGTTCGTGTTGGTCTTTCAGTACCACGGGAGCGTTGGAAGGTGCTCATTTTCTGGCCACTGGCGAGTTAGTGAGCCTTAGCGAGCAACAGCTTGTGGATTGCGACCATGTGTGTGATCCAGAAGAATATGGAGCGTGTGACGCAGGCTGTAATGGTGGGTTGATGAACAACGCATTTGAGTACATACTTGAGTCTGGGGGAGTACAGCGAGAAGAGGACTATCCATACACTGGAAGAGATGGCTCCTGCAAATTTGACAAAAGCAAAATTGCAGCTTCTGTATCTAATTACAGTGTGGTTTCCCTTGATGAAGATCAAATTGCTGCAAACCTAGTGAAGAATGGCCCTCTTGCAGTTGGTATCAATGCAGTTTTCATGCAGACATATATGGGTGGCGTCTCATGCCCATACATCTGTGGGAAGCATTTGGATCATGGGGTTCTTATAGTGGGTTATGGTGAAGGTGCATATGCTCCCATTCGTTTCAAGGAAAAGCCTTACTGGATCATTAAGAATTCATGGGGGGAGAACTGGGGAGAGAATGGATATTACAAGATCTGCAGAGGTCGAAATGTATGTGGAGTGGATTCCATGGTCTCAACCGTAGCTGCTATACTACATTAA 1098 0.5346 MARYTLLALLLLAAAATAATASASADDLLIRQVVPDGEAGEEEEEHLLNAEHHFSTFKARFGKSYATKEEHDHRFGVFKANLRRARLHAKLDPSAVHGVTKFSDLTPAEFRRQFLGLKPLRLPAHAQKAPILPTKDLPENFDWRDKGAVTNVKDQGSCGSCWSFSTTGALEGAHFLATGELVSLSEQQLVDCDHVCDPEEYGACDAGCNGGLMNNAFEYILESGGVQREEDYPYTGRDGSCKFDKSKIAASVSNYSVVSLDEDQIAANLVKNGPLAVGINAVFMQTYMGGVSCPYICGKHLDHGVLIVGYGEGAYAPIRFKEKPYWIIKNSWGENWGENGYYKICRGRNVCGVDSMVSTVAAILH 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0095 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 325 344 IPR025661 -
Ssu5g0095 365 SMART pept_c1 137 361 IPR000668 GO:0006508|GO:0008234
Ssu5g0095 365 CDD Peptidase_C1A 138 360 IPR039417 -
Ssu5g0095 365 Pfam Papain family cysteine protease 137 359 IPR000668 GO:0006508|GO:0008234
Ssu5g0095 365 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 38 361 - -
Ssu5g0095 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 155 166 IPR000169 -
Ssu5g0095 365 PRINTS Papain cysteine protease (C1) family signature 155 170 IPR000668 GO:0006508|GO:0008234
Ssu5g0095 365 PRINTS Papain cysteine protease (C1) family signature 303 313 IPR000668 GO:0006508|GO:0008234
Ssu5g0095 365 PRINTS Papain cysteine protease (C1) family signature 325 331 IPR000668 GO:0006508|GO:0008234
Ssu5g0095 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 301 311 IPR025660 -
Ssu5g0095 365 PANTHER CYSTEINE PROTEASE RD19C-RELATED 38 361 - -
Ssu5g0095 365 SUPERFAMILY Cysteine proteinases 50 359 IPR038765 -
Ssu5g0095 365 SMART Inhibitor_I29_2 54 110 IPR013201 -
Ssu5g0095 365 Gene3D Cysteine proteinases 27 361 - -
Ssu5g0095 365 Pfam Cathepsin propeptide inhibitor domain (I29) 54 110 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0095 Ssu-Chr5 2075992 2078181 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0095 5 2075992 2078181 Ssu5g0095 5 2075992 2078181 ECH
Ssu5g0095 5 2075992 2078181 Ssu1g4091 1 100132067 100133575 PCT