Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0094 ATGGCTGGGTTCTTCTCTCTAGGAGGAAGGCACAACAaggcagaagaagaagaagatcaaAGAGACGACAACAACGTTAACACCGGTAGCGGTCAATTCTTGTTCAGGAACGAAGAGATCTACAACAAGGGATTCGAGATATGGCCACAATCCTCGTACCACCAGAACTTGACCAACTACTACTCCTTCGGTGTGGGTCCTAGTCGCAggaacaacaacgacaacaacaacagctCCTCCAACGTAAACGACGACGTTTCTGTCTCTTTCTCGGATGAGTCGAACCGGTTCGGGTTCACGGTGATGAGGTCCGGTGGCGTAGGTGGCGGCATGAACTGTCAGGACTGTGGGAACCAAGCGAAGAAAGACTGTGAGCACCTCAGATGCAGAACCTGCTGCAAGAGTCGAGGGTTTCAGTGCCAAACGCACGTTAAGAGCACTTGGGTTCCCGCGGCCAGACGCCGTGAACGACAGCAACAACTCACTGCGTTGCAGCAACAAAATCAGCAACCGCAGTTTCGCGGAGACCACTCAAAACGACACAGAGAAAATGTTGAAGCTGCTGGTGGTTCTCTCGCTTGCGCTCCAGTTCCTATCACCACCACAGGGTTGGAGCTGGGGCAATTTCCACCTGAGCTTAACTCTCCGGCGGTGTTTCGGTGTGTGAAAGTTAGTGCAATGGATGCACCGGATGAGCGTTACGCGTATCAAACCGCAGTGAACATAGGGGGCCACGTGTTCAAGGGAATTCTCTACGATCAAGGCACGGAGGGTCCTTACGCGAGTGCAGGTTGTGAGGGTTCATCTGGTGGCGGCGGTGAAGCTCAGCCACTGAGTCTCATGGCTGCCACAAGCACCGCCACAACAAGCGGAATCCCTTTTGACTCTTCGCTCTACACGGCTCCGCTGAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCCCCAAGATCCTAA 957 0.5099 MAGFFSLGGRHNKAEEEEDQRDDNNVNTGSGQFLFRNEEIYNKGFEIWPQSSYHQNLTNYYSFGVGPSRRNNNDNNNSSSNVNDDVSVSFSDESNRFGFTVMRSGGVGGGMNCQDCGNQAKKDCEHLRCRTCCKSRGFQCQTHVKSTWVPAARRRERQQQLTALQQQNQQPQFRGDHSKRHRENVEAAGGSLACAPVPITTTGLELGQFPPELNSPAVFRCVKVSAMDAPDERYAYQTAVNIGGHVFKGILYDQGTEGPYASAGCEGSSGGGGEAQPLSLMAATSTATTSGIPFDSSLYTAPLNAFMAGTQFFPPPRS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0094 318 MobiDBLite consensus disorder prediction 1 30 - -
Ssu5g0094 318 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 316 IPR007818 GO:0003700|GO:0006355
Ssu5g0094 318 Pfam Domain of unknown function (DUF702) 110 257 - -
Ssu5g0094 318 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 316 - -
Ssu5g0094 318 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 112 154 IPR006510 -
Ssu5g0094 318 MobiDBLite consensus disorder prediction 158 173 - -
Ssu5g0094 318 MobiDBLite consensus disorder prediction 156 181 - -
Ssu5g0094 318 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 208 255 IPR006511 -
Ssu5g0094 318 MobiDBLite consensus disorder prediction 10 24 - -
Ssu5g0094 318 MobiDBLite consensus disorder prediction 68 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0094 Ssu-Chr5 2052141 2053612 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Ssu5g0094 DUF702 5.3e-65 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0094 5 2052141 2053612 Ssu3g2879 3 83560968 83561906 ECH
Ssu5g0094 5 2052141 2053612 Ssu5g0094 5 2052141 2053612 ECH
Ssu5g0094 5 2052141 2053612 Ssu1g4157 1 101174065 101175010 PCT