Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0093 ATGAAGATCCAGTGCGACGTGTGCAACAAAGACGAGGCTTCCGTGTTCTGCACCGCCGACGAAGCCGCCCTCTGCGACGGCTGCGACCACCGCGTCCACCATGCCAACAAACTCGCCTCCAAACACCAACGCTTCTCTCTTCTCCGCCCCTCTCCCAAACAACACCCTCTCTGCGATGTCTGCCAGGAGAGAAGAGCCTTCACGTTCTGTCAGCAGGACAGAGCGATTCTGTGCGAAGAGTGTGACGTGTCCCTTCACTCTGCCAACGAACACACCCTGAAACACGATAGGTTCCTTCTCACCGCCGTTAAACTCTCTGCTTCTGCCACGCTTCGTTCTGATTCAAACTCAGCCTCTTCACATCAACCTTTGATCGCCAAAACCACTCCTTCACCAGCATCAACAACACCACCTCCTTCTTCCACCATCGATAAGGTTACTATCGAGGGAACTGGTTCCACAAGCGCTAGCAGCATATCGGAGTATTTGATAGAGACTCTCCCCGGCTGGCAGATTGAGGACTTTCTCGATTCATATTCTGTTCCCTTTGGTTTCTGTAAGGGTGATGAGGTGTTGCCACGGTTTGATGCTGACGTGGAGGGGCATCTGGGTTCCTTCTCGAGCGAGAGCATGGGGATCTGGGTTCCTCAAGCGCCACCACCTCTTCTGCGTTCTTCGCAAATGGATCGGGTGATTGGTCAAAGTGAGACCAACATCAAAGGTAGCAGCAGATCGAGGTTGAAGGATGATAATTTCACTGTTCCACAGATTAGTCCTCACTCCAATTCCAAGAGAGCCAGATTTCTATGGTAG 813 0.5228 MKIQCDVCNKDEASVFCTADEAALCDGCDHRVHHANKLASKHQRFSLLRPSPKQHPLCDVCQERRAFTFCQQDRAILCEECDVSLHSANEHTLKHDRFLLTAVKLSASATLRSDSNSASSHQPLIAKTTPSPASTTPPPSSTIDKVTIEGTGSTSASSISEYLIETLPGWQIEDFLDSYSVPFGFCKGDEVLPRFDADVEGHLGSFSSESMGIWVPQAPPPLLRSSQMDRVIGQSETNIKGSSRSRLKDDNFTVPQISPHSNSKRARFLW 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0093 270 Gene3D Classic Zinc Finger 1 95 - -
Ssu5g0093 270 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Ssu5g0093 270 MobiDBLite consensus disorder prediction 113 131 - -
Ssu5g0093 270 MobiDBLite consensus disorder prediction 250 270 - -
Ssu5g0093 270 CDD Bbox1_BBX-like 57 100 - -
Ssu5g0093 270 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Ssu5g0093 270 CDD Bbox1_BBX-like 5 47 - -
Ssu5g0093 270 MobiDBLite consensus disorder prediction 113 144 - -
Ssu5g0093 270 Pfam B-box zinc finger 54 93 IPR000315 GO:0008270
Ssu5g0093 270 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 267 - -
Ssu5g0093 270 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 267 - -
Ssu5g0093 270 SMART bboxneu5 4 47 IPR000315 GO:0008270
Ssu5g0093 270 SMART bboxneu5 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0093 Ssu-Chr5 1991728 1992932 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu5g0093 zf-B_box 7.8e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0093 5 1991728 1992932 Ssu5g0093 5 1991728 1992932 ECH
Ssu5g0093 5 1991728 1992932 Ssu1g3942 1 97670350 97670821 PCT