Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0090 ATGGCAGAAGACATTGGCAAAAGCAACCTCGAATCCTCTGCTGCTGCTTCAACAACCTCGCGAAGCTTCTGGCCTTCCGTCTTACGTTGGATCCCCACTTCCACCGACCACATCATCGATGCTGAGAAGCGCCTTCTCTCTCTTGTCAAGACTCCGTATGCTCAAGAACAGGTTAATATAGGTTCTGGTCCGCCTGATTCAAGAGTTAAATGGTTCCGTTCATCGAGCAATGAACCGCGGTTTATTAACACTGTTACATTTGACAGTAAGGACGATTCTCCTACACTGGTGATGGTTCATGGATACGCAGCGTCACAGGGTTTCTTTTTTCGCAATTTTGATGCACTTGCCACTCATTTCAGAGTCATTGCTATTGATCAACTTGGTTGGGGTGGATCTAGCAGGCCTGACTTTACATGCAGAAGCACTGAAGAAACTGAGGCGTGGTTCATTGATTCATTTGAGGAATGGAGAAAGGCCAAAAACCTGAGCAATTTTATACTACTTGGGCATTCTTTTGGCGGTTATGTTGCTTCCAAATACGCGCTTAAGcaTCCTGAGCATGTAAAGCACTTGATTCTGGTGGGACCTGCTGGATTTTCATCAGAATCAGAAAGAATTACAAAGTTCTTATCAACGTGGAAAGGATCAATCCTGAACCAGATATGGGAATCTAATTTTACACCTCAGAAAATCATCAGAGGTTTAGGTCCTTGGGGTCCTGATATGGTCCGCAAGTATACAAGTGCTAGGTTTGTTTCATATACAACTGGGGAAATGCTGACAGAATCTGAATCAAGATTACTGACAGATTATGTTTACCATACTTTAGCAGCCAAAGCTAGTGGTGAGCtgtgcttaaaatatatattttcatttggaGCACTCCCGAGGTCACCTCTTCTTCACAGTGTCTCAGAGTGGAAGGTGCCCACCACTTTCATATATGGTTTTCAGGACTGGATGAATTATGAAGGGGCCCAAGAAGCTCGCAAACATATGAAGGTTCCATGTGAAATCATTAGGGTTCCCCAGGCCGGGCACTTTGTGTTCATGGACAACCCAAGTGGCTTCCATTCAGCTGTGTTTTATGCTTGTCGAAGGTTTCTTAGGCCTGATCCAGACAGTGAATCCCTTCCTGAAGGGCTAACCTCTGCATAG 1161 0.4401 MAEDIGKSNLESSAAASTTSRSFWPSVLRWIPTSTDHIIDAEKRLLSLVKTPYAQEQVNIGSGPPDSRVKWFRSSSNEPRFINTVTFDSKDDSPTLVMVHGYAASQGFFFRNFDALATHFRVIAIDQLGWGGSSRPDFTCRSTEETEAWFIDSFEEWRKAKNLSNFILLGHSFGGYVASKYALKHPEHVKHLILVGPAGFSSESERITKFLSTWKGSILNQIWESNFTPQKIIRGLGPWGPDMVRKYTSARFVSYTTGEMLTESESRLLTDYVYHTLAAKASGELCLKYIFSFGALPRSPLLHSVSEWKVPTTFIYGFQDWMNYEGAQEARKHMKVPCEIIRVPQAGHFVFMDNPSGFHSAVFYACRRFLRPDPDSESLPEGLTSA 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0090 386 Pfam alpha/beta hydrolase fold 94 355 IPR000073 -
Ssu5g0090 386 Gene3D alpha/beta hydrolase 80 368 IPR029058 -
Ssu5g0090 386 PRINTS Alpha/beta hydrolase fold signature 119 134 IPR000073 -
Ssu5g0090 386 PRINTS Alpha/beta hydrolase fold signature 168 181 IPR000073 -
Ssu5g0090 386 PRINTS Alpha/beta hydrolase fold signature 182 195 IPR000073 -
Ssu5g0090 386 SUPERFAMILY alpha/beta-Hydrolases 83 362 IPR029058 -
Ssu5g0090 386 PRINTS Epoxide hydrolase signature 182 195 IPR000639 GO:0003824
Ssu5g0090 386 PRINTS Epoxide hydrolase signature 119 134 IPR000639 GO:0003824
Ssu5g0090 386 PRINTS Epoxide hydrolase signature 343 365 IPR000639 GO:0003824
Ssu5g0090 386 PRINTS Epoxide hydrolase signature 168 181 IPR000639 GO:0003824
Ssu5g0090 386 PRINTS Epoxide hydrolase signature 310 326 IPR000639 GO:0003824
Ssu5g0090 386 PANTHER RE40534P-RELATED 1 379 - -
Ssu5g0090 386 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN-RELATED 1 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0090 Ssu-Chr5 1959628 1963330 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0090 5 1959628 1963330 Ssu5g0090 5 1959628 1963330 ECH
Ssu5g0090 5 1959628 1963330 Ssu1g3947 1 97762809 97767656 PCT