Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0085 ATGACATCCTATTCGCTCCTCCTCATAATAACTCTCGTCGTCATCGCGACCCTCCCGCTTCCGTCTCCGGCGCTGGCCGGCGGCGGGCACTGGCAGCTCCTGCAGAAAAGCATCGGCATTGTGGCGATGCACATGCAGCTCCTCCACACCGACACCGTCGTCATCTTCGACCGCACCGACTTCGGCCTCTCCAACCTCTCCCTCCCCGATGGTCGCTGCCGCGACGACCCAAACGAAATGGCCGTCAAAACCGACTGCACCGCTCACTCCCTCGAATACGACGTCGCATCCAACACCTTCCGCGCACTCTTCCTCCAGACCAACGTCTGGTGCTCCTCCGCCTCCGTCGCCCCCGACGGCACACTCGTCCAAACCGGCGGCTTCAACGACGGCGACCGCAGAGTCCGAACCTACAACCCCTGCCCCACCTGCGACTGGAACGAACTCTCCGACAACCTCGCCGCGCGCCGGTGGTACGCCACTAACCACAAGCTCCCGGACGGCCGGCAAATAATAATCGGCGGCAGAAGGCAATTCAACTACGAGTTTTACCCCAAAACGGACACCACCGCAAAAAACACTTACTCTTTGCCCTTTCTCGTTCAAACCGACGACCCTCACGAGGAAAACAATTTATACCCCTTCGTCTTCCTCAACGTGGACGGCACCCTCTTCATCTTCGCCAACGACAGAGCCATATTATTCGATCACACTAAAAACATTGTCGTGAGAACATTCCCGAATGTTCCAGGTTCAGATCCCAGGTGTTACCCTAGCACCGGTTCCGCCGTGCTTTTACCGTTGCGGAATAATTTAGAAGctgaggttttaatttgtggGGGAGCCCCGAGAGGGGCTTATGAACAAGCAAAGTCGGGTAAGTTTCTCGGAGCTTTGAATACGTGTGCCCGGATTAAAATAACCGACCCGGATTCAGAATGGGTTATGGAGACAATGCCCTCGGGTAGGGTAATGAGTGACATGGTTATGCTCCCAAACGGCAACGTTTTGATTGTGAATGGGGCCGGTTTAGGGAGTGCTGGCTGGGAATTCGGGCGTGACCCGGTTCTGAGTCCGTTTCTTTATGACCCGAATAAACCAATCGGGTCGCGGTTCGAAATTTTAAACGCGGCGAACACTCCTCGAATGTACCATTCCACTGCCGTTTTGCTTCGTGATGGGAGGGTGCTCGTTGCTGGGAGCAACCCTCACGTTGGTTACAATTTTAGCAACGTGTTGTTCCCTACGGAGCTTAGTGTGGAGGCGTTTTCGCCTTCGTATTTGGAACCTGGGTTTGATAACGTGCGTCCCAGAATCGCGTTTCCGGAGTCTCGAACCAAAGTCATGTATGGTCAGAAGCTGAAGGTGCGGTTCCACGTGGTAGGGTCGTTGGTTTGGAATTTGGTGTCGGTGACGGTGATGGCGCCGCCTTTTAACACCCATTCCTTTTCCATGAATCAGAGGGTGTTGGTGTTGGAGCCAAGCAACGTGACAAATGTGGGAGGATCAGCGTATGAAATTGAGGTTACCACACCCGGCTCGCCCGTTCTTGCACCACCCGGTTTTTATCTACTCTTTGTGGTCCACCAAGAAATTCCAAGCGAGGGAATTTGGATCCAGATACTTTGA 1629 0.5378 MTSYSLLLIITLVVIATLPLPSPALAGGGHWQLLQKSIGIVAMHMQLLHTDTVVIFDRTDFGLSNLSLPDGRCRDDPNEMAVKTDCTAHSLEYDVASNTFRALFLQTNVWCSSASVAPDGTLVQTGGFNDGDRRVRTYNPCPTCDWNELSDNLAARRWYATNHKLPDGRQIIIGGRRQFNYEFYPKTDTTAKNTYSLPFLVQTDDPHEENNLYPFVFLNVDGTLFIFANDRAILFDHTKNIVVRTFPNVPGSDPRCYPSTGSAVLLPLRNNLEAEVLICGGAPRGAYEQAKSGKFLGALNTCARIKITDPDSEWVMETMPSGRVMSDMVMLPNGNVLIVNGAGLGSAGWEFGRDPVLSPFLYDPNKPIGSRFEILNAANTPRMYHSTAVLLRDGRVLVAGSNPHVGYNFSNVLFPTELSVEAFSPSYLEPGFDNVRPRIAFPESRTKVMYGQKLKVRFHVVGSLVWNLVSVTVMAPPFNTHSFSMNQRVLVLEPSNVTNVGGSAYEIEVTTPGSPVLAPPGFYLLFVVHQEIPSEGIWIQIL 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0085 542 SUPERFAMILY E set domains 432 541 IPR014756 -
Ssu5g0085 542 Pfam Galactose oxidase-like, Early set domain 436 541 IPR015202 -
Ssu5g0085 542 PANTHER OXIDASE, PUTATIVE, EXPRESSED-RELATED 26 541 - -
Ssu5g0085 542 Gene3D - 26 431 IPR037293 -
Ssu5g0085 542 SUPERFAMILY Galactose oxidase, central domain 91 429 IPR011043 -
Ssu5g0085 542 Gene3D Immunoglobulins 435 542 IPR013783 -
Ssu5g0085 542 Pfam Glyoxal oxidase N-terminus 43 281 IPR009880 -
Ssu5g0085 542 CDD E_set_GO_C 431 541 IPR015202 -
Ssu5g0085 542 PANTHER SECRETED PROTEIN-RELATED 26 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0085 Ssu-Chr5 1881443 1883071 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0085 5 1881443 1883071 Ssu5g0085 5 1881443 1883071 ECH
Ssu5g0085 5 1881443 1883071 Ssu1g3950 1 97840383 97840820 PCT
Ssu1g3951 1 97863386 97865030 Ssu5g0085 5 1881443 1883071 PCT