Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu5g0083 | ATGGAAGGTGTTGATCAAAGTAATATGAATCGAAATAGTTGTGCATTTGGTTCATCATCAGGAGCGGCTATCAGAGCCCCAAATCGATTGAATAATGTTATGCCCATTAATCATATGGGTGTTGCTGAGAACCAGAAACCCTATGGTATACCACCCTCCCACCCCAATAGCAATATTTCACCTTCTTCACCTTATCCTCAATTTTTTGCCTCCCAATCCCAATCCAATTCGGTTTCCCAGCGTGTGTGTTCTCCCAATTTGAGTTCTGCTTCATCCCATTCCAGATCTTTGTCTCAGCCCTCTTTTTTCTCCCTGGATTCCTTGCCCCCATTGAGTCCTTCCCCTTATAGAGAAACCTTGGCAGCTACCTCCTTGTCTGACTCAATTTCAACAGATGTGTCTGCTGAGGAAGGCTTGGCAACCTCTCATGGCCCTTTGCCTAATCGTGGTCACGCGCTTCAGCTTGGCCATTCTCTTCCTCCTCGCAAAGGGCATAGGCGCTCTAGCAGTGATTCCCCTTCAGGAATCTCTGATTTTATTCACTCTGTCCCTCAGTTTCTTCCCTCTAGGACTTGGAGTGATCGCGACAATTCAGCTTCTAGGGGAGGGAACTCTGGTTTTGAGAAGCCAATTCAGTTAGTGTTAAAGGAACCGGTTAAGGATGTGGACCGTTTTGATGGCTTTAGTGGAGAACCAATGGATGGGAGGAAAGAGGATGATGGACTGGATGATTTATTTAGTGCATATATGAATTTGGACAACATTGATGGTCTGAATTTTTCTGCTATGGAAGATAAGGATTTGGATAGCAGAACTAGTGGTTCCAAGACGGTTGAAAGCAGTGATAATGAAGTTGAGAGTCATGCAAATGGAAAAGCAACCGGTGCTCAAGGGGCTAGTTCAAGCTGTTCAGAAGAGAGGAGGGAAGGAGTGAAGAGGAGTTCTAATGGAGACATTGCACCTGGTTCCCGACACCGGAGAAGTTTCTCATTGGACAGCTCCATAGGAAGTTTTCATATTGGAGATGAATCTCCTAAGCTTCCTCCTTTGCAAAACCGAGTTGGTCAACACTCGCCAAGCAATTCGATAGATGGTAAGACATCTGAAACAAGCATGGAGTTTGGAAATGGTGAATTCAGCTCAGAGGagctaaagaaaataaaggaaaacgaTAAGCTTGCTGAAATTGCCATGTCTGATCCTAAGCGTGCAAAAAGGATTTTGGCTAATCGTCTATCAGCTGCTCGCTCAAAAGAGCGGAAGATGCGATACATTTCTGAATTAGAGCTCAAAGTCCAAACACTTCAGACAGAGACAACCACATTGTCTACTCAGTTTACCAAATTACAGATGGACAATTCAGAGCTTAAAAGTGAGAATAATGAGTACAAATTGAGGATTCAAGCCTTGGAACAGCAGTCCCAACTGAAAGATGCTCTGAATGAGACCTTGGATGCTGAAGTGCGGCGTTTAAGACTCACGGTTGCAGAACTCGGGGGAGAGTCACTCCTCTCAAGTCGCATGGCTCAACAGCTTGCTATTAGCCAACAAATGTTGCAGTTACAGCACCAGCAGCAACCCAGCCAGCTTAGACATTTTCAGCTGCACAATAGCCATTCCCAGGAACAGACACAGACTCAGTCGCAGCGCCACAATGGCAAAGCTACTGCCTACTGA | 1677 | 0.4484 | MEGVDQSNMNRNSCAFGSSSGAAIRAPNRLNNVMPINHMGVAENQKPYGIPPSHPNSNISPSSPYPQFFASQSQSNSVSQRVCSPNLSSASSHSRSLSQPSFFSLDSLPPLSPSPYRETLAATSLSDSISTDVSAEEGLATSHGPLPNRGHALQLGHSLPPRKGHRRSSSDSPSGISDFIHSVPQFLPSRTWSDRDNSASRGGNSGFEKPIQLVLKEPVKDVDRFDGFSGEPMDGRKEDDGLDDLFSAYMNLDNIDGLNFSAMEDKDLDSRTSGSKTVESSDNEVESHANGKATGAQGASSSCSEERREGVKRSSNGDIAPGSRHRRSFSLDSSIGSFHIGDESPKLPPLQNRVGQHSPSNSIDGKTSETSMEFGNGEFSSEELKKIKENDKLAEIAMSDPKRAKRILANRLSAARSKERKMRYISELELKVQTLQTETTTLSTQFTKLQMDNSELKSENNEYKLRIQALEQQSQLKDALNETLDAEVRRLRLTVAELGGESLLSSRMAQQLAISQQMLQLQHQQQPSQLRHFQLHNSHSQEQTQTQSQRHNGKATAY | 558 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu5g0083 | 558 | Coils | Coil | 446 | 490 | - | - | |
| Ssu5g0083 | 558 | Gene3D | - | 399 | 462 | - | - | |
| Ssu5g0083 | 558 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 400 | 463 | IPR004827 | GO:0003700|GO:0006355 | |
| Ssu5g0083 | 558 | MobiDBLite | consensus disorder prediction | 536 | 558 | - | - | |
| Ssu5g0083 | 558 | MobiDBLite | consensus disorder prediction | 287 | 304 | - | - | |
| Ssu5g0083 | 558 | MobiDBLite | consensus disorder prediction | 50 | 99 | - | - | |
| Ssu5g0083 | 558 | MobiDBLite | consensus disorder prediction | 267 | 380 | - | - | |
| Ssu5g0083 | 558 | Pfam | bZIP transcription factor | 402 | 460 | IPR004827 | GO:0003700|GO:0006355 | |
| Ssu5g0083 | 558 | Coils | Coil | 418 | 438 | - | - | |
| Ssu5g0083 | 558 | MobiDBLite | consensus disorder prediction | 170 | 205 | - | - | |
| Ssu5g0083 | 558 | MobiDBLite | consensus disorder prediction | 133 | 212 | - | - | |
| Ssu5g0083 | 558 | MobiDBLite | consensus disorder prediction | 42 | 99 | - | - | |
| Ssu5g0083 | 558 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
| Ssu5g0083 | 558 | PANTHER | BZIP TRANSCRIPTION FACTOR | 69 | 557 | - | - | |
| Ssu5g0083 | 558 | MobiDBLite | consensus disorder prediction | 351 | 377 | - | - | |
| Ssu5g0083 | 558 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 69 | 557 | - | - | |
| Ssu5g0083 | 558 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Ssu5g0083 | 558 | SUPERFAMILY | Leucine zipper domain | 402 | 457 | IPR046347 | GO:0003700|GO:0006355 | |
| Ssu5g0083 | 558 | CDD | bZIP_plant_RF2 | 403 | 475 | IPR044759 | GO:0003700|GO:0006355 | |
| Ssu5g0083 | 558 | SMART | brlzneu | 398 | 462 | IPR004827 | GO:0003700|GO:0006355 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu5g0083 | Ssu-Chr5 | 1840488 | 1843128 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | bZIP | Ssu5g0083 | bZIP_1 | 2e-10 | CL0018 |
Event-related genes