Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0080 ATGGCTGTGGATAACCCTGAGGATGGATTGAAGAAGCTAGAATACTTGTCGCTGGTGTCGAAGGTGTGCACCGAATTGGAGTCTCACACCGGCACCGGCGACAAGGTTCTCGCGGAGTTCATCACGGAGTTGGGTCGATCATCGGAGAATGTTGAGGAATTCGACGCCAAACTGAAGGAGAACGGTGCGGAGATGCCGGATTACTTTGTCCGAACGCTCCTCACCATTATTCACGCCATTCTCCCTCCCAAGCCCAAGGAtttgaagaaggagaaagagagtGACAACAGCAATACCAATTTCAAGGCTCTGGCCATTGCAGATGACAGGGACCGGGCCAAGGAGCTTCGGAAGGAGATAGAATCTGAGGCCAGAGAAAAGCAAAAAGAACGAATTGAGGAAGATGATGGGTACAGAGATAGAGATAGAGATAGAAGAGATAGGTGCAGAGATAGGTATGAAAGAGGTAGAGATGATGAATATGATAGAAGGGATTACAGcagaagagaaagagatagagatgatgaagatgatagAAGGGATTACAACAGAAGAGGAAGAGACAGAGATAGATATGATAGGGATAGAGATAGAGGTAGGGATCGAGATAGATATGAGAGGCGCAGGAGAGATGGGTACGAAGAGGATGATGGGCGTGGAAGGGAGAATGGGGATATAGATGGGAATAGGAAGGGTTCACGGCATGGTTCTGGCGAACCTGAATTGTACGCGGTTTACAAAGGGAGAGTGTCGAGGGTAATGGAGACTGGATGCTTTGTCCAGTTGGATGACTTTAGAGGGAGGGAGGGGTTGGTACATGTTTCGCAAATGGCTACTCGGAGGATTACGAATGCGAAGGATGTTGTGAAGCGTGATCAAGAGGTGTATGTAAAGGTTATATCAATTTCAGGTCAGAAGTTATCCCTTTCCATGAGAGATGTTGATCAACATACTGGGAGGGATCTTCTACCGTTGAAGAAGAGCTCTGAGGATGACACGTTGAGGATGAATCCACAGGATTCGAAGGATGGGCCGGTTGCTAGGACAGGTCTTTCGGGTATCAAGATTGTGGAAGAAGATGATGTTGGTTCTTCGCGGAGACCTCTGAAGAGAATGAGCTCTCCGGAGAAATGGGAAGCGAAACAGTTGATTGCTTCGGGTGTCTTGAGTGTTTCAGAGTATCCAACTTATGATGAGGAGGTAGATGGATTGCTGTACCAAGAGGAAGGTGCTGAGGAGGAGCTTGAGATTGAGTTGAATGAGGATGAACCTGCATTCTTGCAAGGGCAGAGCAGATACTCATTGGATATGTCTCCTGTTAAGATTTTTAAGAATCCAGAAGGTTCTCTGGGTCGAGCTGCTGCACTCCAGTCTGCACTTATAAAGGAGCGTAGGGAAGTGCGAGAACAACAACAACGCACAATGCTTGATTCAATTCCAAAGGATCTCAATCGGCCTTGGGAAGACCCTATGCCTGAGACAGGTGAAAGGCATCTTGCCCAGGAGCTTAGGGGTGTTGGCTTATCAGCCTATGATATGCCGGAATGGAAGAAGGATGCCTATGGGAAAACCATTACCTTTGGGCAAAGGTCAAAGCTTTCTATTCAGGAGCAGAGGCAGAGTTTGCCAatttacaagttaaaaaaagaattgattcAGGCTGTGCATGATAATCAGGTGTTGGTGGTTATTGGAGAAACTGGTTCAGGTAAGACTACTCAGGTCACACAGTATCTTGCTGAAGCGGGTTACACCACAAAAGGCAAAATTGGATGTACTCAACCCCGTAGGGTGGCTGCAATGTCAGTTGCAAAGAGAGTCGCAGAAGAGTTTGGTTGTCGATTGGGAGAGGAAGTTGGTTATGCCATTCGGTTTGAGGATTGCACTGGACCAGATACTGTTATCAAGTACATGACAGATGGTATGCTTCTTAGGGAAATACTGGTTGATGAGAATCTGTCACAGTATTCTGTTATAATGCTTGATGAAGCCCACGAAAGAACTATTCATACTGATGTTCTTTTTGGACTGCTGAAGCAGCTAGTGAAGCGTAGACCTGAATTGCGGTTGATTGTCACATCTGCTACTCTGGATGCTGAGAAATTTTCAGGATATTTCTTTAACTGTAACATCTTTACAATTCCTGGTAGAACTTTTCCTGTGGAGATACTTTATACGAAACAACCTGAAAGTGATTACTTAGATGCATCTTTAATCACTGTCCTACAGATCCACTTGACAGAGCCTGAAGGAGACATTCTTCTCTTCTTGACTGGTCAAGAAGAGATTGATTTTGCTTGCCAATCTCTGTATGAGAGAATGAAAGGATTAGGTAAGAATGTTCCAGAGCTGATCATTTTACCGGTTTATAGTGCCCTTCCTAGTGAAATGCAGTCTAGAATATTTGAACCTGCTCCTCCTGGAAAAAGGAAAGTGGTTGTGGCTACTAACATTGCTGAGGCTTCTTTGACTATTGATGGgatattttatgtaattgatCCTGGATTTGCTAAGCAAAATGTTTATAACCCAAAGCAAGGTCTTGATTCTTTGGTGATAACTCCAATTTCACAAGCATCAGCCAAACAAAGAGCTGGACGTGCAGGGCGTACCGGACCTGGGAAGTGTTATCGTCTCTATACCGAAAGTGCATATAGGAATGAGATGTCTCCCACTTCAATTCCTGAGATTCAAAGGATAAATCTGGGGATGACTACTCTTAATATGAAGGCTATGGGGATAAATGATCTACTGTCCTTTGATTTTATGGATCCACCATCACCCCAAGCACTTATTTCTGCCATGGAGCAGCTGTACAGTCTTGGAGCATTGGATGAAGAGGGTCTTTTAACCAAATTGGGGAGGAAAATGGCAGAATTTCCTTTGGATCCACCGTTGTCCAAGATGCTGCTTGCCAGTGTGGACCTTGGATGCAGTGATGAGATTTTGACCATAATTGCTATGATCCAGACCggcaatattttttataggcCAAGGGAAAAGCAAGCCCAAGCTGATCAGAAGAGGGCTAAGTTTTTCCAGCCAGAGGGTGACCATCTTACACTACTTGCTGTTTATGAGGCTTGGAAAGCGAAGAATTTTTCTGGGCCCTGGTGTTTTGAGAACTTTGTGCAATCCCGATCATTGAGAAGAGCACAGGATGTCAGGAAGCAACTTCTCACCATTATGGATAAGTACAAATTGGATGTTGTAAGTGCTGGAAAAAACTTCACCAAAGTCAGGAAGGCTATCACTGCAGGATTCTTTTTCCATGCTGCTAGAAAGGACCCCCAGGAAGGTTACAGAACCCTTGTTGAGAACCAGCCTGTGTATATCCATCCAAGTTCAGCTTTATTCCAGAGACAGCCAGACTGGGTCATCTACCATGAGCTTGTGATGACAACTAAGGAGTATATGCGTGAGGTCACTGTCATAGACCCCAAATGGCTTGTTGAATTGGCTCCAAGATTCTTCAAAGTGGCAGATCCTACAAAGATGAGCAAGCGAAAGCGTCAAGAGCGAATTGAACCACTTTATGATAGATACCACGAGCCAAATTCGTGGCGTTTGAGTAAACGCCGTGCATGA 3588 0.4384 MAVDNPEDGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITELGRSSENVEEFDAKLKENGAEMPDYFVRTLLTIIHAILPPKPKDLKKEKESDNSNTNFKALAIADDRDRAKELRKEIESEAREKQKERIEEDDGYRDRDRDRRDRCRDRYERGRDDEYDRRDYSRRERDRDDEDDRRDYNRRGRDRDRYDRDRDRGRDRDRYERRRRDGYEEDDGRGRENGDIDGNRKGSRHGSGEPELYAVYKGRVSRVMETGCFVQLDDFRGREGLVHVSQMATRRITNAKDVVKRDQEVYVKVISISGQKLSLSMRDVDQHTGRDLLPLKKSSEDDTLRMNPQDSKDGPVARTGLSGIKIVEEDDVGSSRRPLKRMSSPEKWEAKQLIASGVLSVSEYPTYDEEVDGLLYQEEGAEEELEIELNEDEPAFLQGQSRYSLDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFEPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGMTTLNMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKVRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA 1195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0080 1195 Pfam Helicase associated domain (HA2) 934 1022 IPR007502 GO:0004386
Ssu5g0080 1195 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 657 666 IPR002464 -
Ssu5g0080 1195 Pfam S1 RNA binding domain 243 310 IPR003029 GO:0003676
Ssu5g0080 1195 SMART S1_6 241 312 IPR022967 -
Ssu5g0080 1195 PANTHER - 83 1195 - -
Ssu5g0080 1195 CDD S1_DHX8_helicase 243 319 - -
Ssu5g0080 1195 SMART helicmild6 768 872 IPR001650 -
Ssu5g0080 1195 SMART ultradead3 540 724 IPR014001 -
Ssu5g0080 1195 ProSiteProfiles S1 domain profile. 243 312 IPR003029 GO:0003676
Ssu5g0080 1195 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1080 1155 IPR011709 -
Ssu5g0080 1195 Gene3D - 238 323 IPR012340 -
Ssu5g0080 1195 MobiDBLite consensus disorder prediction 121 147 - -
Ssu5g0080 1195 MobiDBLite consensus disorder prediction 160 237 - -
Ssu5g0080 1195 MobiDBLite consensus disorder prediction 324 350 - -
Ssu5g0080 1195 Gene3D - 718 892 IPR027417 -
Ssu5g0080 1195 SUPERFAMILY Nucleic acid-binding proteins 243 318 IPR012340 -
Ssu5g0080 1195 Pfam DEAD/DEAH box helicase 548 698 IPR011545 GO:0003676|GO:0005524
Ssu5g0080 1195 CDD DEXHc_DHX8 537 715 IPR044762 GO:0000398|GO:0003724|GO:0005524
Ssu5g0080 1195 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 552 715 IPR014001 -
Ssu5g0080 1195 Coils Coil 106 133 - -
Ssu5g0080 1195 MobiDBLite consensus disorder prediction 86 106 - -
Ssu5g0080 1195 Gene3D - 917 1016 - -
Ssu5g0080 1195 Coils Coil 453 473 - -
Ssu5g0080 1195 MobiDBLite consensus disorder prediction 324 338 - -
Ssu5g0080 1195 MobiDBLite consensus disorder prediction 160 239 - -
Ssu5g0080 1195 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 740 913 IPR001650 -
Ssu5g0080 1195 CDD SF2_C_RHA 719 880 - -
Ssu5g0080 1195 Pfam Helicase conserved C-terminal domain 742 872 IPR001650 -
Ssu5g0080 1195 Gene3D - 514 717 IPR027417 -
Ssu5g0080 1195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 532 1065 IPR027417 -
Ssu5g0080 1195 SMART ha2_5 933 1023 IPR007502 GO:0004386
Ssu5g0080 1195 PANTHER ATP-DEPENDENT RNA HELICASE 83 1195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0080 Ssu-Chr5 1637027 1640959 Dispersed/Transposed