Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0079 ATGGGTTCAGTCTCTCTGAAAATAGGAGATGGAACAGCCAGATTCCAAAGAGCAACACTGTGTTCTTCAGCAGTTAACATTCTCATGATCTTCTCTGTCATCACCACTAACCTCTTTGCTCTCTACGCCTTCACCGCTTCCCCAAAACACCCCCATCCCCATGACCACCACCCGGCCCACAAGAACATCTCCCTCATCTCCGAGCAGGTCTCACTCATTCTCAGAGAGATCGATTTGTCCCAGAAGAAACTGGCCCAGATGGAGAAAGAGCTTCTCGGCTACGAAAGCATTGATCTTTCGCGACCCAACATTGCCACCGAGCTCAAACTCTTCCTCACGCGCCACCAGCTCCCTCTGGGGAAAGACTCAAGAACCGGGATCACTGAGATGGTGCCATCCGTTGGCCACACGTGTGAGAAAAACTCAGACTTGTTGTCCCAGTTCATGAGTTACAAGGTTTTTGGACCTTGCCCTGATGATTGGAGTGTCGCGCAGAAACTGATCTTAAGAGGGTGTGAGCCTTTGCCTAGGAGGAGGTGTTTTGCAAAGACTGTTTCCAAGGTAGGTTTGTACCCCTTTCCGGTTTCTCTTTGGAAGCCTGTTGGTAATAAGACTGTTAACTGGAGTGGCCTTGGTTGTAAGAATTTTGAGTGTTTGAATGGCAAGAAGTTGAGTAGGGAGTGCTTTGGTTGCTTTGATTTGGTTCATGGCAATGAGAATGTTCGGTTTGTTAAGGGTAAGAGTAAGAATGATTTTTTAGTTGATGATGTGTTGGCCTTGGGAGGTGGAGGGGTTAGAATAGGGCTTGACATTGGTGGAGGCTCTGGATCCTTTGCTGCTAGAATGGCTGATAGGAATGTTACTGTGGTTACCAGCACTCTCAATGTGGATGCCCCATTCAGTGAGTTCATTGCTACAAGAGGGCTGTTCCCTCTTTACTTGAGCTTGGATCATAGGTTCCCTTTCTATGACAATGTGTTTGACTTGGTTCATGCTGCAAGTGGCTTGGATGTTGGAGGGAAGAGTGAGAAGTTGGAGTTTTTGATGTTTGATATTGATAGGGTTTTGAGGGCTGGTGGCTTGTTTTGGCTGGATAACTTCTTTTGTGCCAATGAAGAGAAGAAGCAAGCTCTGACTCGGTTGATTGAAAGGTTTGGGTATAAGAAGTTGAAATGGGTTGTGGGAGAGAAGGTTGATAGCGTTGGGTCTGGCAAACCTGAAGTTGTGTTGTCTGCTGTCCTTCAGAAACCCGTTAGAGCTTAG 1263 0.4703 MGSVSLKIGDGTARFQRATLCSSAVNILMIFSVITTNLFALYAFTASPKHPHPHDHHPAHKNISLISEQVSLILREIDLSQKKLAQMEKELLGYESIDLSRPNIATELKLFLTRHQLPLGKDSRTGITEMVPSVGHTCEKNSDLLSQFMSYKVFGPCPDDWSVAQKLILRGCEPLPRRRCFAKTVSKVGLYPFPVSLWKPVGNKTVNWSGLGCKNFECLNGKKLSRECFGCFDLVHGNENVRFVKGKSKNDFLVDDVLALGGGGVRIGLDIGGGSGSFAARMADRNVTVVTSTLNVDAPFSEFIATRGLFPLYLSLDHRFPFYDNVFDLVHAASGLDVGGKSEKLEFLMFDIDRVLRAGGLFWLDNFFCANEEKKQALTRLIERFGYKKLKWVVGEKVDSVGSGKPEVVLSAVLQKPVRA 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0079 420 Coils Coil 70 90 - -
Ssu5g0079 420 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 249 388 IPR029063 -
Ssu5g0079 420 Gene3D Vaccinia Virus protein VP39 242 400 IPR029063 -
Ssu5g0079 420 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN-RELATED 1 419 - -
Ssu5g0079 420 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 261 389 IPR004159 GO:0008168
Ssu5g0079 420 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 1 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0079 Ssu-Chr5 1625953 1627215 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0079 5 1625953 1627215 Ssu5g0079 5 1625953 1627215 ECH
Ssu5g0079 5 1625953 1627215 Ssu1g3959 1 97985136 97986404 PCT