Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0078 ATGATGGCTTCCGTAgaagaaaagattaaaactGGAGGTGTTGGAGTTGGAGTTGGAGGAGGAATGGTTGTCGGGGGTCAAACTCTAGTGGCCGAGATGAAACTGCTAAAAGAAATGCAGGAACATTCTGGGCTCAGAAAGACTTTAAATTCAGAGTTATGGCATGCTTGTGCAGGCCCTCTTGTGTCATTACCTCAGGTTGGGAGCCTTGTGTTTTACTTCCCTCAGGGACATAGTGAGCAGGTGGCAGCTTCTACTAGAAGAACAGCAACCTCTCAGATTCCAAACTACCCCAATCTTCCATCTCAGTTGCTGTGCCAAGTTCAAAATGTCACACTTCATGCAGACAAGGAGACAGATGAAATCTATGCTCAAATGACTCTCCAACCACTGAATTCTGAAAAAGAAGTCTTTCCCGTATCCGATTTTGGGCTAAAGCACAGTAAACATCCCAGTGAGTTCTTCTGCAAAACCTTGACTGCTAGTGACACGAGTACACATGGCGGTTTTTCAGTTCCACGCAGGGCAGCAGAGAAGCTCTTTCCGTCATTGgattacacaattcaacccccaaCCCAAGAACTTGTTGTTCGAGATTTGCATGATAACACCTGGACATTTCGACATATTTACCGGGgtCAACCAAAGAGACACCTTCTCACAACAGGATGGAGTTTGTTTGTAGGCTCAAAAAGGCTTAGAGCTGGTGATTCTGTTCTTTTCATCAGGGATGAGAAATCGCAATTGCGAGTTGGTGTGAGGCGTGTTAACCGTCAACAGACAACACTGCCATCATCAGTACTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCGGCTCACGCTGCTGCCAATCGAAGTCCATTCACTATTTTCTACAATCCAAGGGCATGCCCTTCAGAATTTGTTATTCCACTGGGTAAATACAGAAAAGCTGTGTTTGGGACTCAGGTCTCAGTTGGTATGAGATTTGGCATGATGTTTGAGACAGAAGAATCGGGTAAGCGCAGATATATGGGTACAATAGTTGGTATCAGTGATGTGGATCCTTTGAGGTGGCCTGGTTCCAAATGGAGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGGTGATAAGCAGAATAGAGTTAGTGTATGGGAGATTGAGACTCCTGAAAGCCtttttatctttccttctttGACTTCAAGTCTAAAACGGCCATTACAGTCTGGACTTTTGGAAAATGAGTGGGGAACTTTGTTAAGAAGACCTTTTACAAGAGTTCCAGAAAATGGAACTATGGAGCTCTCAAACTCAATTCCAAATCTCTACTCTGAACACCTGATGAAAATGCTTTTTAAACCCcagattattaataataatggagCATTTTTATCCGTCATGCATCAAGAATCTGCTGCTACAAGAGGTCCCTTGCAAGAGATGAAGACCACACTGGCAGCAGAGAACATACCTCTTAAAAATCTACATTCTCAATCTATCCCTGACCAACCTAATGCCTTAAACATGCAATCACTGTTGAAAAGTGATCAACCTGAAAAATTGCATCCTCTGGCCAAAATTGATAATCATCTGCCTTCTGGAACAGTTACTGACAAGCAAAAATTAGTATCTGAGGTATTACCTGATCATATGATTGACTACCCTTCCATGGAAGGCTGCAACATTGAAAAGGTGGCAGCAAATCCTGTTAACCAGCAAGGCCTAGCAAGCCAATTGACATTCcataatcaaaaccaaagtcCACTATTCACTCAATCTAGTCCATGGCCTATGCAACCACAGGTAGAATCGTCCATACCCCATCCTCAAATGATTGACATGGCTCAAGCTGAATCTGCTATGGTAAATGGCCTGCTTCCTCAGCTAGACATTGATGAATGGATGGTGTATGCTTCTTCCCAACCTTTTACTGGTCAGAACAGACCAGCTGCACCTTTATCAGACTTGCAAGAACACACCTCACTTCAAGCTCAAGCAGTGAATCCTCCTTTGCCTTCAATGAACCATGAAGTGTGGGATCACTATGTGAAGAATTTGAAGTTCTTATCTCAAGCAGACCAGCTAACATCCGTCTGTCAGCCAGGGCTGTATGGCCTCAATGGCATGTCTAGTTCAAACAATTTGAGGGATCTTTCAGCTGAGAGCAACAACCAAAGTGAGATTTGTGTCAACGTTGATGTTAGCAACAGTGTAGGCACCACCATGGTTGATCCTTCTACTTCAAGCACCATTTTGGATGAGTTTTGCACAATGAAGGACAGAGAATTTCAGAATCCACAAGATTGCATGGTGGGCAACTTGAGTTCAAGCCAGGATGTCCAGTCTCAAATAACCTCCGCAAGTCTAGCTGAGTCACATGCGTTTTCTTTGAGAGACAACTCAGGTGGTACTTCTTCAAGCCatgttgattttgatgaaaGCAGCTTTCTGCAGAATAACTCATGGCAGCAAGTACCTGCGCCCATCCGAACTTACACAAAGGTGCAAAAGGCAGGTTCGGTAGGAAGATCAATTGATGTTACTACTTTCAAAAACTATGAGGAGTTGATCCGTGCAATTGAATGCATGTTTGGACTCGATGGTCTGCTGAATGACACTAAAGGTTCAGGATGGAAATTGGTGTATGTAGATTATGAGAATGATGTTCTGCTTGTTGGGGATGATCCTTGGGAGGAATTTGTGGGCTGTGTCCGCTGCATCAGAATTTTATCACCTTCAGAAGTTCAGCAGATGAGTGAAGAGGGCATGAAGCTTCTAAACAGTGGAGCTTTGCAAGGGATGAGTGTTTGA 2802 0.4251 MMASVEEKIKTGGVGVGVGGGMVVGGQTLVAEMKLLKEMQEHSGLRKTLNSELWHACAGPLVSLPQVGSLVFYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNVTLHADKETDEIYAQMTLQPLNSEKEVFPVSDFGLKHSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPSLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLGKYRKAVFGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSSLKRPLQSGLLENEWGTLLRRPFTRVPENGTMELSNSIPNLYSEHLMKMLFKPQIINNNGAFLSVMHQESAATRGPLQEMKTTLAAENIPLKNLHSQSIPDQPNALNMQSLLKSDQPEKLHPLAKIDNHLPSGTVTDKQKLVSEVLPDHMIDYPSMEGCNIEKVAANPVNQQGLASQLTFHNQNQSPLFTQSSPWPMQPQVESSIPHPQMIDMAQAESAMVNGLLPQLDIDEWMVYASSQPFTGQNRPAAPLSDLQEHTSLQAQAVNPPLPSMNHEVWDHYVKNLKFLSQADQLTSVCQPGLYGLNGMSSSNNLRDLSAESNNQSEICVNVDVSNSVGTTMVDPSTSSTILDEFCTMKDREFQNPQDCMVGNLSSSQDVQSQITSASLAESHAFSLRDNSGGTSSSHVDFDESSFLQNNSWQQVPAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNSGALQGMSV 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0078 933 SUPERFAMILY DNA-binding pseudobarrel domain 144 284 IPR015300 -
Ssu5g0078 933 SMART B3_2 155 257 IPR003340 GO:0003677
Ssu5g0078 933 ProSiteProfiles PB1 domain profile. 827 911 IPR000270 GO:0005515
Ssu5g0078 933 ProSiteProfiles B3 DNA-binding domain profile. 155 257 IPR003340 GO:0003677
Ssu5g0078 933 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 37 931 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu5g0078 933 Pfam AUX/IAA family 824 914 IPR033389 -
Ssu5g0078 933 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu5g0078 933 Gene3D - 319 391 - -
Ssu5g0078 933 PANTHER AUXIN RESPONSE FACTOR 5 37 931 - -
Ssu5g0078 933 Pfam B3 DNA binding domain 155 256 IPR003340 GO:0003677
Ssu5g0078 933 SUPERFAMILY CAD & PB1 domains 829 906 - -
Ssu5g0078 933 CDD B3_DNA 154 255 IPR003340 GO:0003677
Ssu5g0078 933 Gene3D - 153 256 IPR015300 -
Ssu5g0078 933 Gene3D - 824 916 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0078 Ssu-Chr5 1616616 1621431 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu5g0078 AUX_IAA 5.9e-11 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0078 5 1616616 1621431 Ssu5g0078 5 1616616 1621431 ECH