Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0074 ATGGGAGTCCCAGCGTTCTATCGATGGCTGGCGGAGAAATATCCACTGGTGGTGGTGGACGCAATCGAAGAGGAACCGGTCGTCATCGACGGCGTTCAAATCCCCGTCGATACGAGCAAGAAGAACCCTAACAACATCGAATACGATAACCTCTACCTCGACATGAACGGCATCATTCACCCTTGTTTCCACCCCGAGGATAGGCCGTCTCCGACGTCGTTCGATGAGGTGTTTGAGTGCATGTTTGACTACATTGACAGGCTGTTCGTCATGGTGCGGCCTCGGAAGCTGCTCTATATGGCTATTGACGGTGTTGCGCCGAGGGCGAAAATGAACCAGCAGCGGTCTAGGCGGTTTAGGTCTGCGAAAGATGCAGCTGATGCGGCTGCTGAAGAAGCAAGGTTAAGGGAGGAATTTGAGAAGGAGGGCAGAAAGCTTCCTCCTAAAGAAGAGTCGCAGACTTTTGATTCAAATGTCATTACACCTGGAACTGAATTTATGGCTGTTTTGTCAATTGCTCTTCAGTACTATATTCATCTTAGGTTGAACAATGACCCTGGTTGGCAAAATATTAAGGTTATTCTTTCTGATGCAAATGTTCCTGGTGAAGGGGAGCATAAGATTATGTCCTATATTCGCCTGCAGAGAAATCTTAAAGGTTATGATCCAAATACAAGACATTGCCTATATGGTTTGGATGCCGATTTGATTATGTTGGCATTGGCTACCCATGAAATCCATTTTTCAATTCTTAGAGAGATTGTATTTACTCCTGGACAAGACAAATGCTTCCTCTGTGGTCAGATGGGTCATGTGGCTGCAAACTGTGAAGGAAAGGCAAAAAGGAAGGCAGGAGAGTTTGATGAAAAAGGAGAGGCTATTGTGGCGAAAAAGCCCTTCCAGttCCTGAACATTTGGACTCTGAGGGAATATCTGGAGTATGAGATGAGAATACCTAATTCTCctctcaaaattgattttgaatgcaTTGTGGATGATTTTATCTTCATGTGTTTTTTTGTCGGCAACGATTTCCTACCACATATGCCTACACTGGAGATTCGTGAGggTGCAATTAACTTGCTGATAGCAGTGTACAAGAAGGAATTTAGGGAATTGGGTGGTTATTTAACCAATGGAAGCACGCCAAATTTGAGCAGGGTGGAGCACTTCATTCAGGCTGTCGGATCTTATGAGGATAAAATATTCCAGAAAAGAGCTCGATTGCATCAGCGACAAACGGAAAGAATAAAGCGTGAAAAGGCACAGGCAAGAAAGGGAGATGATGCTGAGCCTCAATTTCAACCAGAGTCTTTAGTTGCAGTTTCACGATTCCATGGTTCTCGTCTAGCTTCGGCTCCAAAACCTTCACCATTTCAACAATCTGGGCATTATAATTCTCAAGTGTCCTCGTCAGTTAGGAAAGACAATAAAGAAGCCTTTGAGAGACCTAGTAAAGTTGCTAGGTTATCTTCAGGAGCAACTGTTGCTGCTGCTATTGTTGAAGCTGAAAGTAGTCTTGAAACAGAAGTTCAAGATAATAAAGAcgaattgaaaacaaaattgaagGAGATACTTCGTGAGAAATCTGATGTATTCAACTCAAAAAATGCCGAAGAGGACAAGATTAAGTTGGGAGAAGCAGGCTGGAAAGAGAGATATTATGACGAAAAATTTTCTGCTAAAACTCCTGAGGAACTTGAAGCGATACGGAAAGATGTTGTCTTGAAATACACTGAAGGCCTATGTTGGGTGATGCACTATTATTATGAAGGTGTTTGTTCTTGGCAATGGTTTTATCCTTATCATTATGCCCCCTTTGCGTCTGATCTCAAGGGCCTTGGTGAACTTGATATTAGCTTTAAGCTGGGTACCCCATTCAAACCATTTGATCAGCTTCTAGGGGTCTTTCCTGCTGCAAGCTCTCATGCACTTCCTGAGCCTTATAGGAGACTTATGACAGATCCAAACTCACCAATCATTGACTTCTATCCATTTgACTTTGAAGTGGATATGAATGGCAAACGCTATGCTTGGCAGGGTATTGCGAAGTTGCCTTTTATTGATGAAGTGCGTCTTCTTGCGGAAGTTCAAAAGATTGAAAACTTGTTAACAGTATGTCTCTGTCCTCCTTTGTCCTTTGAGTTTAAATGCACATTTGGTTCAATTCACTGTTCTcaactccccccccccccccaattttttttttacttagctACGCTTATATTTTGTCATATCCtatctctattaaaaaaaaaggcagagGAAAAGCGACGGAATGCTATAATGTTCGACTTGCTCTTTGTGAATTCTTGTCATCCTCTCTCTGCGTGCATAAGTACACTTGACAACAAGTGTAAAAACATGTCAACCAGTCAACGGGCTGTGgtcaaggaaaaaataaatccCAAAGAAAGGGATACATGCAGTGGTGGAATGAATGGTTACATATCCTTATGTGCTGGAGAACCTTGCCCTCCTATCTTTAGGTCTCCTGTTGCAAGCATGGAAGATATCATGGACAACCATGTTATATGTGCAATATATAGACTCCCAGATGTGCATAAACACATTACCCAACCACCACAAGGAGTTAAATTTCCAAAGAAGATTGTTACAATTGGGGATCTAAAACCTGAACCTGTTTTATGGCATGAAGATTCAGGTAGGAGACATAATGCTGAAAATGGGAGGAAATACCCTTCAGGATCTATCTCTGGTCGGGAGCTTGGAGAGGCAGCACACAGACTCGTTGTCAATTCCTTGCAGGCAAAGGTTGACACTAATGGATACCGCCATTCACATAATGGACCTCCTTTATCTTATCCTTCACCAATGGATCATCGACAACCAGTGCCTTCCTATAGTTATGAATCACGCCCAGGATACGTTGCAATGCCGCCTCCTATTTCAGCTCCTTCACTTCAAGGCAGACCACAGTTTGCACCTTACAATGCTGTCCCTACTGCTCAGCAGTATGGTTATAATCAACCATACCCGCCACCGCCGGGGGTGTACAATCCTCGTCAGCAATCAAATTCTTACGGAAGAAATGACTATCAACACCCTGGATCACATTATGAAAGAAATCACCATCAGGGTAGTGGGGGTAGCTCAAGGCATGGATATCAATCAGGAAATAATCAGAATGCCAGGTTTATGAATACACAAGGTGCATATAATAGTCACCATCATGAAGTTAGTCACCACAGCCAAAACTTCCAACCATCTAGGGCTTATCAGAATTGGACTCCACGAAACAACCCGAGTGGGCACAGGGAATATGGTCATCATTCGTCCAATCAATATTCTTTATTAGATAGAAGGGGAAACAGGAATCCAATGCCACCACCTGGTTACAGTCGCAAGTAA 3372 0.4161 MGVPAFYRWLAEKYPLVVVDAIEEEPVVIDGVQIPVDTSKKNPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTSFDEVFECMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRSAKDAADAAAEEARLREEFEKEGRKLPPKEESQTFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWQNIKVILSDANVPGEGEHKIMSYIRLQRNLKGYDPNTRHCLYGLDADLIMLALATHEIHFSILREIVFTPGQDKCFLCGQMGHVAANCEGKAKRKAGEFDEKGEAIVAKKPFQFLNIWTLREYLEYEMRIPNSPLKIDFECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLIAVYKKEFRELGGYLTNGSTPNLSRVEHFIQAVGSYEDKIFQKRARLHQRQTERIKREKAQARKGDDAEPQFQPESLVAVSRFHGSRLASAPKPSPFQQSGHYNSQVSSSVRKDNKEAFERPSKVARLSSGATVAAAIVEAESSLETEVQDNKDELKTKLKEILREKSDVFNSKNAEEDKIKLGEAGWKERYYDEKFSAKTPEELEAIRKDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKGLGELDISFKLGTPFKPFDQLLGVFPAASSHALPEPYRRLMTDPNSPIIDFYPFDFEVDMNGKRYAWQGIAKLPFIDEVRLLAEVQKIENLLTVCLCPPLSFEFKCTFGSIHCSQLPPPPQFFFYLATLIFCHILSLLKKKAEEKRRNAIMFDLLFVNSCHPLSACISTLDNKCKNMSTSQRAVVKEKINPKERDTCSGGMNGYISLCAGEPCPPIFRSPVASMEDIMDNHVICAIYRLPDVHKHITQPPQGVKFPKKIVTIGDLKPEPVLWHEDSGRRHNAENGRKYPSGSISGRELGEAAHRLVVNSLQAKVDTNGYRHSHNGPPLSYPSPMDHRQPVPSYSYESRPGYVAMPPPISAPSLQGRPQFAPYNAVPTAQQYGYNQPYPPPPGVYNPRQQSNSYGRNDYQHPGSHYERNHHQGSGGSSRHGYQSGNNQNARFMNTQGAYNSHHHEVSHHSQNFQPSRAYQNWTPRNNPSGHREYGHHSSNQYSLLDRRGNRNPMPPPGYSRK 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0074 1123 MobiDBLite consensus disorder prediction 130 157 - -
Ssu5g0074 1123 MobiDBLite consensus disorder prediction 409 432 - -
Ssu5g0074 1123 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Ssu5g0074 1123 Coils Coil 122 142 - -
Ssu5g0074 1123 Coils Coil 508 528 - -
Ssu5g0074 1123 MobiDBLite consensus disorder prediction 992 1123 - -
Ssu5g0074 1123 Gene3D - 147 374 - -
Ssu5g0074 1123 Gene3D - 1 135 - -
Ssu5g0074 1123 CDD PIN_XRN1-2-like 51 312 - -
Ssu5g0074 1123 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Ssu5g0074 1123 MobiDBLite consensus disorder prediction 409 437 - -
Ssu5g0074 1123 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Ssu5g0074 1123 MobiDBLite consensus disorder prediction 1072 1108 - -
Ssu5g0074 1123 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Ssu5g0074 1123 MobiDBLite consensus disorder prediction 927 960 - -
Ssu5g0074 1123 MobiDBLite consensus disorder prediction 130 151 - -
Ssu5g0074 1123 MobiDBLite consensus disorder prediction 449 486 - -
Ssu5g0074 1123 Gene3D - 617 707 - -
Ssu5g0074 1123 MobiDBLite consensus disorder prediction 1036 1062 - -
Ssu5g0074 1123 MobiDBLite consensus disorder prediction 454 474 - -
Ssu5g0074 1123 PANTHER 5'->3' EXORIBONUCLEASE 1 705 IPR027073 -
Ssu5g0074 1123 PANTHER 5'->3' EXORIBONUCLEASE 754 1021 IPR027073 -
Ssu5g0074 1123 Pfam Xrn1 helical domain 753 876 IPR041412 -
Ssu5g0074 1123 Pfam Xrn1 helical domain 324 705 IPR041412 -
Ssu5g0074 1123 PANTHER 5'-3' EXORIBONUCLEASE 1 705 - -
Ssu5g0074 1123 PANTHER 5'-3' EXORIBONUCLEASE 754 1021 - -
Ssu5g0074 1123 PIRSF Exonuclease_Xrn2 747 1105 IPR017151 GO:0004534|GO:0005634|GO:0006139
Ssu5g0074 1123 PIRSF Exonuclease_Xrn2 1 707 IPR017151 GO:0004534|GO:0005634|GO:0006139
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0074 Ssu-Chr5 1459899 1471375 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0074 5 1459899 1471375 Ssu5g0074 5 1459899 1471375 ECH