Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0073 ATGGATCTGATCCTTAGATTATTTAAGAGAACAACTGACACCAATTCTCACAACTTTTGGGCATTTGTTTTCAGAAAGATTGCCCCCTCCCTTCTTCTGCTTAATTTCCTTTACTCCTCTTTGTTCTATTCTATTCTCTCTGTCCCTCTCCCacccttcattttattttacccTCAACTCAACCAATTCACTTTTCCTATTATGGAAATTGAACAGAAACCCATGAAGTCTAGGTTCAGACGTATCTGTGTCTTCTGTGGCACTAGCCCAGGGAAGAACCCCAGTTACCAACTCGCTGCTATCCAACTCGGCAAACAACTAGTGGAGAGGAACATCGACTTGGTTTACGGAGGAGGGAGCATTGGATTGATGGGTTTAATCTCACAAGTTGTGTTTGATGGTGGACGCCACGTGTTAGGGGTCATTCCAACCACTCTTATGCCAACAGAgATCACGGGAGAGACTGTGGGGGAAGTGAGAGCAGTGTCGGGCATGCACCAACGCAAGGCAGAAATGGCTCGACAAGCCGATGCATTTATTGCGCTGCCagGAGGATATGGCACCCTGGAAGAACTACTTGAAGTGATCACCTGGGCTCAACTAGGAATCCACGATAAACCCGTGGGGTTGTTGAACGTGGATGGGTACTACAACTCGTTGCTGTCATTCATGGACAATGCCGTAGACGAAGGTTTCATAACACCCGCTGCCCGTCACATTATTGTGTCTGCCCAAACTGCCCAAGACCTCGTGTGCAAGCTTGAGGAATACGTCCCCAAGCACTGTGGCGTGGCACCAAAGCAAAGTTGGGAGATGGACCAACAGTGTTAG 831 0.4669 MDLILRLFKRTTDTNSHNFWAFVFRKIAPSLLLLNFLYSSLFYSILSVPLPPFILFYPQLNQFTFPIMEIEQKPMKSRFRRICVFCGTSPGKNPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLISQVVFDGGRHVLGVIPTTLMPTEITGETVGEVRAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFMDNAVDEGFITPAARHIIVSAQTAQDLVCKLEEYVPKHCGVAPKQSWEMDQQC 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0073 276 Pfam Possible lysine decarboxylase 124 253 IPR031100 -
Ssu5g0073 276 Gene3D - 69 256 - -
Ssu5g0073 276 SUPERFAMILY MCP/YpsA-like 78 257 - -
Ssu5g0073 276 PANTHER LOG FAMILY PROTEIN YJL055W 72 274 - -
Ssu5g0073 276 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 72 274 - -
Ssu5g0073 276 TIGRFAM TIGR00730: TIGR00730 family protein 81 257 IPR005269 GO:0009691|GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0073 Ssu-Chr5 1424191 1429206 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0073 5 1424191 1429206 Ssu1g3969 1 98237467 98240014 PCT