Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0068 atggCTCTCCTAACTTCCTTGCCTGAACAGTCCACCCCCAAACGCCACAAGCGTaagccacaacaacaacaacaacaacagaagCAAAAGCAAAAACAGAAACAAAAGCAGAAACCACCCTCTTCGTGGGACCAAATCAAGAACCTAATCACCTGCAAACAGATCGAAGGTTCCAGAGTGCATGACCCCTCCAAAGTAGCTACAGGGTACTCTAAACTTGGCTCTTCTTGCAGCTCTATATGCAGCTTCAGAGATGTGGTTCACGGTAACACACGTGTTGTGCACAGGTCTGATAACTCCTCACCAGAGAGTAGCTCTCTGGGTCAGGAAACTGGGTTACTCACTAGGAAACCTGTCTCATCAACTCGCTCCGCATCAGGAAAATCCAACGGTGGAGCATCCTACACGTCATCATCTTCCAGAGGAATGCAATTCAGGAAGCTATCTGGGTGTTATGAATGTCACATGATCATTGACCCTAGCagGTTACCAATTGCGAGGAGCACTGTGTGTGCTTGCTCTCACTGTGGTGAGGTTTTCCCTAAAATGGAAAGTTTGGAGCTGCATCAAGCTGTTCGCCATGCCGTCTCGGAGCTAGGTCCGGAGGATTCGGGTCGGAACATAGTGGAAATAATCTTCAAATCGAGCTGGTTGAAGAAGGACAACCCGATATGCAAGATCGAACGGATTCTAAAAGTGCACAACACCCAACGCACCATCCAACGGTTCGAGGAGTGCAGGGACACGGTAAAGAACCGTGCGCTGAGCAGCAGCAAGAAAAACCCCAGGTGCGCAGCCGACGGCAACGAACTCTTGCGGTTCCACTGCACCACCTTAACGTGCGCACTGGGCGCACGTGGGTCCTCCTCCCTCTGCGCCTCCGTACCCGGCTGCGGAGTCTGCACCATCATCAGGCACGGTTTCCAAGGTGGAGGCGCCGGCGGCGACCAGGCGAAGGTGAAGGGCGTGAAGACCACCGCCAGCAGCGGTAGGGCCCACGACGCCGTCGTGTGCGGCTGTGAAGGCACGCGGAGGGCCATGCTCGTCTGCCGCGTGATCGCGGGGAGAGTGAAGCGCGTGGCGGAGGACGCGCCGTCGGAGGAGGAACACGTGTCGGTTGCGTCCTATGATTCCGTAGCTGGCTACGCCGGAATCTACTCGAATCTTGAGGAGTTAGTTGTTTTCAACCCAAAGGCTATCCTTCCTTGTTTCGTGGTCATTTATAAGGTGCTTTCGTGTTAg 1242 0.5258 MALLTSLPEQSTPKRHKRKPQQQQQQQKQKQKQKQKQKPPSSWDQIKNLITCKQIEGSRVHDPSKVATGYSKLGSSCSSICSFRDVVHGNTRVVHRSDNSSPESSSLGQETGLLTRKPVSSTRSASGKSNGGASYTSSSSRGMQFRKLSGCYECHMIIDPSRLPIARSTVCACSHCGEVFPKMESLELHQAVRHAVSELGPEDSGRNIVEIIFKSSWLKKDNPICKIERILKVHNTQRTIQRFEECRDTVKNRALSSSKKNPRCAADGNELLRFHCTTLTCALGARGSSSLCASVPGCGVCTIIRHGFQGGGAGGDQAKVKGVKTTASSGRAHDAVVCGCEGTRRAMLVCRVIAGRVKRVAEDAPSEEEHVSVASYDSVAGYAGIYSNLEELVVFNPKAILPCFVVIYKVLSC 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0068 413 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 26 412 - -
Ssu5g0068 413 MobiDBLite consensus disorder prediction 1 46 - -
Ssu5g0068 413 Gene3D - 195 410 - -
Ssu5g0068 413 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 26 412 - -
Ssu5g0068 413 MobiDBLite consensus disorder prediction 24 46 - -
Ssu5g0068 413 MobiDBLite consensus disorder prediction 94 140 - -
Ssu5g0068 413 SUPERFAMILY ADP-ribosylation 196 409 - -
Ssu5g0068 413 ProSitePatterns Zinc finger C2H2 type domain signature. 171 194 IPR013087 -
Ssu5g0068 413 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 199 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0068 Ssu-Chr5 1294288 1297299 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu5g0068 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0068 5 1294288 1297299 Ssu5g0068 5 1294288 1297299 ECH