Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0067 ATGTTTGGTACATCTGAGGAGCTATTCGACTTCATTGCTTCGGGGCTAGCAAAATTTGCGGCCAAGGAGGATGGTAGATTTCATGTCTCAGcgggaagaaagagagagattggGTTCACGTTTTCATTTCCTGTGAAGCAGACATCTATTGATTCTGGCATACTAATCAAGTGGACCAAAGGTTTTGCAGTCTCTGGAACAGCGGGAAGAGATGTGGTTGCTTGTCTGAATGAGGCTATGGAAAGGCAAGGACTAGATATGCGAGTTTCTGCTCTGGTGAATGATACTGTGGGAACATTAGCTGGAGCAGAATACTGGGACAATGATGTCACGGTTGCTGTCATTTTGGGAACTGGAACCAATGCTTGCTATGTTGAGCAGATCAGTGCCATTCCTAAGTTACAGGGCCATGTCTCTTCTTCTGGGAAAATGATCATTAGTACTGAGTGGGGGGCTTTCTCAAATGGTCTCCCTTTAACCGAGTTTGATAGGGAAATGGATGCTGCTAGCATCAATCCGGGTGAGCAGATCTTTGAAAAGACAATCTCAGGAATGTATCTAGGCGAAATTGTTAGACGAGTGCTACTGAAAATGGCTGAAGAGGGTGGTTTGTTTGGCAACTCTGTCCCGCAAAAACTATCTACATCTTTCATACTCGggaCCCCAGATCTATGTGCCATGCAGCAGGACTGTTCTGGTGATTTACAAACAGTTGGGACCCTCCTCTATGATAAAGCAGGGGTTGAATCCAATTCAAGTGAAAGAAAAACAGTTTTAGAGGTTTGTGAGACTATTGTAAAGCGAGGTGGCAGCTTAGCTGGTGCAGGAATAGTGGGGATTCTACAAAAAATGGAAGAGGACCAGAGAGGTCTTATCTTTGGGAATGGGAACAGAAGTGTTGTTGCCATCGATGGGGGCTTATACGAAAATTATCCTCAATACAGGGCTTATTTGCATGATTCAGTCAAAGAACTGCTAGGAACAGAAAAGTCAAACAATGTGGTGATAGAGCATACAAAAGATGGATCTGGCATAGGAGCTGCTCTTTTGGCTGCTTCAAACTCCATGTACAAGCATGAGTTATAG 1086 0.4309 MFGTSEELFDFIASGLAKFAAKEDGRFHVSAGRKREIGFTFSFPVKQTSIDSGILIKWTKGFAVSGTAGRDVVACLNEAMERQGLDMRVSALVNDTVGTLAGAEYWDNDVTVAVILGTGTNACYVEQISAIPKLQGHVSSSGKMIISTEWGAFSNGLPLTEFDREMDAASINPGEQIFEKTISGMYLGEIVRRVLLKMAEEGGLFGNSVPQKLSTSFILGTPDLCAMQQDCSGDLQTVGTLLYDKAGVESNSSERKTVLEVCETIVKRGGSLAGAGIVGILQKMEEDQRGLIFGNGNRSVVAIDGGLYENYPQYRAYLHDSVKELLGTEKSNNVVIEHTKDGSGIGAALLAASNSMYKHEL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0067 361 ProSiteProfiles Hexokinase domain profile. 1 352 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Ssu5g0067 361 Gene3D - 2 351 - -
Ssu5g0067 361 PANTHER HEXOKINASE-LIKE 1 PROTEIN-RELATED 26 357 - -
Ssu5g0067 361 SUPERFAMILY Actin-like ATPase domain 1 108 IPR043129 -
Ssu5g0067 361 SUPERFAMILY Actin-like ATPase domain 109 355 IPR043129 -
Ssu5g0067 361 Pfam Hexokinase 112 352 IPR022673 GO:0005524|GO:0005975|GO:0016773
Ssu5g0067 361 PANTHER HEXOKINASE 26 357 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Ssu5g0067 361 Pfam Hexokinase 3 105 IPR022672 GO:0005524|GO:0005975|GO:0016773
Ssu5g0067 361 Gene3D - 106 340 - -
Ssu5g0067 361 ProSitePatterns Hexokinase domain signature. 37 62 IPR019807 GO:0004396|GO:0005524|GO:0006096
Ssu5g0067 361 PRINTS Hexokinase family signature 337 353 - -
Ssu5g0067 361 PRINTS Hexokinase family signature 37 62 - -
Ssu5g0067 361 PRINTS Hexokinase family signature 112 126 - -
Ssu5g0067 361 PRINTS Hexokinase family signature 176 198 - -
Ssu5g0067 361 PRINTS Hexokinase family signature 258 280 - -
Ssu5g0067 361 PRINTS Hexokinase family signature 89 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0067 Ssu-Chr5 1273745 1276880 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0067 5 1273745 1276880 Ssu5g0067 5 1273745 1276880 ECH