Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0066 ATGATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACTCGTCTTGCCAAGTACTACGTTCCGCTCGAGGATTCCGAGAAGCACAAGGTCGAATACGAGGTTCATCGCCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTTGAGTTTCGTACGTACAAGATAATATACAGGCGATATGCTGGCTTGTTTTTCTCGCTCTGTGTTGACATCACTGATAATGAGTTGGCATATTTAGAGTGCATCCATTTATTTGTGGAAATATTGGATCACTTCTTCAGCAATGTGTGTGAACTCGATTTGGTTTTTAACTTCCATAAGGTCTATCTTATACTTGATGAATTTATTCTAGCTGGTGAACTGCAAGAAACAAGCAAGAAGGCTATCATTGAGAGAATGGGGGAACTGGAAAAACTGGAGTGA 429 0.4149 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKYTNFVEFRTYKIIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0066 142 PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY 2 142 IPR016635 GO:0015031
Ssu5g0066 142 Pfam Clathrin adaptor complex small chain 1 141 IPR022775 -
Ssu5g0066 142 PIRSF AP_complex_sigma 1 142 IPR016635 GO:0015031
Ssu5g0066 142 CDD AP2_sigma 1 141 IPR027156 GO:0016192|GO:0030122|GO:0035615|GO:0072583
Ssu5g0066 142 Gene3D - 1 142 - -
Ssu5g0066 142 SUPERFAMILY SNARE-like 1 136 IPR011012 -
Ssu5g0066 142 PANTHER AP COMPLEX SUBUNIT SIGMA 2 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0066 Ssu-Chr5 1270622 1272182 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0066 5 1270622 1272182 Ssu5g0066 5 1270622 1272182 ECH