Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0055 ATGGCTCCCCATTGTTTCTCCATACACATTGCTCTCATCTGGGTTCTTCTTTGCGAAGGTGCATCAGGAGCCACGTTTACTCTAACCAACAAGTGTGATTACACGGTGTGGCCCGGGATTTTGGCCAATGCTGGCAGCTCCGGATTGGACTCAACCGGGTTTGAGCTTCGACCCGGTGGGTCGCGGAGCTTCCAGACTCCACCCAATTGGTCCGGAAGATTCTGGGGCCGGACCGGGTGCAATTTTGACCCGAATACCCAACAGGGTAGTTGCACCACAGGGGATTGTGGCTCCAACCAGGTCCAATGCAATGGGGGCGGGGCAAGCCCACCCGCCACGTTGGCCGAGTTCACAATCGGGTCGGGTACGGGTACCCAGGATTTTTACGACGTGAGTCTCGTTGACGGTTACAATTTGCCGTTAATTGTGGACCCCAGTGGCGGATCGGGTACTTGCGGGTCCACTGGGTGCGTTGCGGACCTAAACCAACGGTGCCCGAATGAGTTACGGGTCGCGGACCGTGCCGCGTGTAAGAGCGCGTGCGAGGCGTTTCGGAGCCCCCAATATTGTTGCAGCGGCGCGTACGCCTCACCCGCGACTTGTAAGCCTTCGGTTTACTCGCAGATATTCAAATCCGCGTGTCCCAAATCGTATAGCTACGCCTACGACGACGCTACGAGTACGTTTACGTGTACGGGAGCTGATTATACCATTACATTCTGCCCTTCCACCACAAGCCAAAAATCGGCAAGAGATTCACCACCACCTCCTTCTGGAATTGGGTCTGAAACAGGGACAGGGGAGATGCCATTGATAGTTAATAGTCCATGGTTTCCCAACTTTTTCACTGGACTCTCATCCAAGTCTCACTCTTGCCCCTTGTCGTTGATTGCTACTCTCACTATGCTAGTGTTCTTCTCTTTGCAATATTCATAG 936 0.5406 MAPHCFSIHIALIWVLLCEGASGATFTLTNKCDYTVWPGILANAGSSGLDSTGFELRPGGSRSFQTPPNWSGRFWGRTGCNFDPNTQQGSCTTGDCGSNQVQCNGGGASPPATLAEFTIGSGTGTQDFYDVSLVDGYNLPLIVDPSGGSGTCGSTGCVADLNQRCPNELRVADRAACKSACEAFRSPQYCCSGAYASPATCKPSVYSQIFKSACPKSYSYAYDDATSTFTCTGADYTITFCPSTTSQKSARDSPPPPSGIGSETGTGEMPLIVNSPWFPNFFTGLSSKSHSCPLSLIATLTMLVFFSLQYS 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0055 311 SUPERFAMILY Osmotin, thaumatin-like protein 24 243 IPR037176 -
Ssu5g0055 311 ProSiteProfiles Thaumatin family profile. 23 242 IPR001938 -
Ssu5g0055 311 MobiDBLite consensus disorder prediction 244 265 - -
Ssu5g0055 311 SMART tha2 26 242 IPR001938 -
Ssu5g0055 311 PANTHER THAUMATIN-LIKE PROTEIN 1 14 255 - -
Ssu5g0055 311 Pfam Thaumatin family 30 242 IPR001938 -
Ssu5g0055 311 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Ssu5g0055 311 PRINTS Pathogenesis-related protein signature 127 143 IPR001938 -
Ssu5g0055 311 PRINTS Pathogenesis-related protein signature 232 241 IPR001938 -
Ssu5g0055 311 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Ssu5g0055 311 Gene3D Thaumatin 24 242 IPR037176 -
Ssu5g0055 311 PANTHER OS03G0233200 PROTEIN 14 255 IPR001938 -
Ssu5g0055 311 CDD TLP-PA 25 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0055 Ssu-Chr5 1017690 1019325 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0055 5 1017690 1019325 Ssu2g2250 2 79064223 79065891 ECH
Ssu5g0055 5 1017690 1019325 Ssu5g0055 5 1017690 1019325 ECH