Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0044 ATGGTTCTTTTAATGAAGTTCCCTTCTTCTCCTCCTCATCTTCCTTCCTCGCTGCTCCTTTGCatattattgtttgttattgttTGTAAAACAAGGGCAGTTGTGAAACTGCCCCCAAATGTTTCAGTTCCAGCAGTGTTGATGTTTGGAGATTCGATCGTGGATAcgggtaacaacaacaacaacttggGAACAACGGCTCGCTGCAATTTCCCACCATATGGTAAAGATTTCAAGGGAAGGATTCCAACTGGCCGGTTTAGTAATGGAAAGGTTCCATCGGATCTTATAGTTGAAGAATTGGGCATAAAAGAGTTTCTACCGGCATACTTGGAGCCAAATCTCCAACCTGGTGAATTGGCCACTGGTGTGTGCTTTGCATCTGGTGGCGCCGGATACGATCCTTTGACATCACAAACATCGTCGGCAATATCTTTATCGGGTCAACTAGACTTGTTCAAAGAATACATAGGGAAGTTACGAGGACTCGTTGGAGAAGACAGAACAAACTTCATCTTAGCCAACAGTCTTTTTGTTGTGGTATTTGGCAGCAATGACATTGCcaacacatactttttgaacCGTATTAGACAACTGCAATATGATTTTCCTGCATACGCTGATCTTATGGTCAGCTCAgcttctaatttcttgaagGAAATATATCGACTAGGGGCACGGAGAATTGCAGTATTCAGTGTACCGCCACTTGGTTGTGTGCCATCTCAGAGAACGGTGGCAGGAGGaacagaaagaaaaattgtagTGAAGTATAACGAGGCAGCACAGTTATTTAACAGCAAATTGGCAAAGGAGCTGGATTCTCTTAATCATAACCTTCCAAATAGCAGGATGGTTTACATTGATGTTTACAACCCTCTCCTTGACATCATTCTAAACTACCAAaaatatgGCTATAAAGTCGGAGACAGGGGGTGCTGTGGCACGGGCACAATAGAGGTTGTGTTATTATGCAACCGTTTCACTCCCTTGTGTCCCAACGATTTGGAGTATGTGTTTTGGGACAGTTTTCACCCTACTGAAAGCGCTTATAAAAAGCTCATAGCTCCtactattgaaaaatatttgaaagaactCACGTGA 1104 0.3904 MVLLMKFPSSPPHLPSSLLLCILLFVIVCKTRAVVKLPPNVSVPAVLMFGDSIVDTGNNNNNLGTTARCNFPPYGKDFKGRIPTGRFSNGKVPSDLIVEELGIKEFLPAYLEPNLQPGELATGVCFASGGAGYDPLTSQTSSAISLSGQLDLFKEYIGKLRGLVGEDRTNFILANSLFVVVFGSNDIANTYFLNRIRQLQYDFPAYADLMVSSASNFLKEIYRLGARRIAVFSVPPLGCVPSQRTVAGGTERKIVVKYNEAAQLFNSKLAKELDSLNHNLPNSRMVYIDVYNPLLDIILNYQKYGYKVGDRGCCGTGTIEVVLLCNRFTPLCPNDLEYVFWDSFHPTESAYKKLIAPTIEKYLKELT 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0044 367 Pfam GDSL-like Lipase/Acylhydrolase 46 354 IPR001087 GO:0016788
Ssu5g0044 367 SUPERFAMILY SGNH hydrolase 46 365 - -
Ssu5g0044 367 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 21 360 - -
Ssu5g0044 367 Gene3D SGNH hydrolase 36 365 IPR036514 -
Ssu5g0044 367 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 46 57 IPR008265 GO:0006629|GO:0016298
Ssu5g0044 367 CDD SGNH_plant_lipase_like 44 356 IPR035669 -
Ssu5g0044 367 PANTHER GDSL ESTERASE/LIPASE EXL3 21 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0044 Ssu-Chr5 751344 755613 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3992 1 98659877 98710134 Ssu5g0044 5 751344 755613 PCT