Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0042 ATGGTTACCACTGCTAAATCTTCTAACCACCACTCGCCCCCTAGTGCTCCGTCACCGGCGCAGCCCAGCGACGGCAACAGCCCTAAGTTCCCGCGAAAAAACCTTCCCTCGCCGTGGGCTCAGGTGGTTCGCGGCGGAGAGCCAGAATCGGCGGCCGGCATTCACCAATCGCCGCCGCCGTCGtcatcgtcgtcgtcgtcgtcgtcccTGGCTGCCGACCAAGCGCCATCGTCGGAGTGTTCCCCGAAGGTGATTCCGGCGTCGCCGCCGGTGGATAATTATAATACGGTTGGTGCTGTAGATAGCTCTGATGGTAGTGAGGGCAATGCGGATCGTTCTAAGAAGCCCGTTTGGAACAAGCCCTCAAACGGCATCGTGGAGAGTGGGCCTGTAATGGGCGCTGAATCGTGGCCCGCTTTGTCTGAATCCACCAAAGCTTCTGCTAAATTGCCAGCTGAATCGTCCTCCAAGACTGTTGCCGAAGGATCACTCTCCACTTCTCAGGGGCCAATGACTTCACAATCTCCTCAGAAGCAAGCTACCACTAATGCAAAACCTAATTCTGCAACGAATTATAATGTGCCTAATAGACAAAGATCAATGAAGCGGGTAGGTGGCAGCAGCAGCATTGGGTCTGGTCCTTCCCAGAGCAACTTCTCCAACCCTCCCCCACCCCCACCACCCCCACCTTTTCCTGTATACCAGCTCCCATCAGTTAGCTATGGTAATATGGTACCAGGGGTCCTTGACCCCTCACCAAGAGATCATTATCGGAACAATAACTGGGATGCAAGACCAATGGTAGGGGGTTTTGTGCCTGCGATGAATGAATATCGGGGTTCCTCTCGTAGGGGTTATTTTGGGCCTCATCCAAGAGGAGATGGTTCCTATCATAATAGTTATGGTAGCAGGCGTGATCAAGATCGTGGAAATTATGTGAATACTAGAGATGCTTTTGTACCTCAACCAAGGATGCCTCCACGAGGATTACTAAGGCACCCACCACCTAGTACTGCTGCATTTGTGGGCCCTCAGCCCATTGGACCATTTGCTAACCCCATTGGTTTTTCTGaATTCTACTACTATCAACCAGTAACAGTGGATCAGTTTACGGGTATGCCGTTCTTCACTCACAGCCCTCCTCCTACACCGTTCTTCTCTGCTGCAGAATCTCCTCTTTCAAATATGATAGTCAACCAAATTGAATACTACTTTAGTGATGCTAATTTAGTGAGAGATGAGTTTTTAAGGTCTAAAATGGATGAACAAGGTTGGGTTCCTGTTACTTTGATAGCAGACTTCCCTCGAGTAAGTTATTTGTGCTTGATGAGGCAATACTTCCTGCATCTTTTATGTAGAGCCTTTTAA 1368 0.4898 MVTTAKSSNHHSPPSAPSPAQPSDGNSPKFPRKNLPSPWAQVVRGGEPESAAGIHQSPPPSSSSSSSSSLAADQAPSSECSPKVIPASPPVDNYNTVGAVDSSDGSEGNADRSKKPVWNKPSNGIVESGPVMGAESWPALSESTKASAKLPAESSSKTVAEGSLSTSQGPMTSQSPQKQATTNAKPNSATNYNVPNRQRSMKRVGGSSSIGSGPSQSNFSNPPPPPPPPPFPVYQLPSVSYGNMVPGVLDPSPRDHYRNNNWDARPMVGGFVPAMNEYRGSSRRGYFGPHPRGDGSYHNSYGSRRDQDRGNYVNTRDAFVPQPRMPPRGLLRHPPPSTAAFVGPQPIGPFANPIGFSEFYYYQPVTVDQFTGMPFFTHSPPPTPFFSAAESPLSNMIVNQIEYYFSDANLVRDEFLRSKMDEQGWVPVTLIADFPRVSYLCLMRQYFLHLLCRAF 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0042 455 MobiDBLite consensus disorder prediction 1 232 - -
Ssu5g0042 455 Pfam La domain 397 439 IPR006630 -
Ssu5g0042 455 SUPERFAMILY "Winged helix" DNA-binding domain 387 441 IPR036390 -
Ssu5g0042 455 MobiDBLite consensus disorder prediction 218 232 - -
Ssu5g0042 455 MobiDBLite consensus disorder prediction 55 76 - -
Ssu5g0042 455 ProSiteProfiles La-type HTH domain profile. 387 455 IPR006630 -
Ssu5g0042 455 SMART la 391 453 IPR006630 -
Ssu5g0042 455 PANTHER LUPUS LA PROTEIN-RELATED 6 440 IPR045180 -
Ssu5g0042 455 MobiDBLite consensus disorder prediction 140 217 - -
Ssu5g0042 455 MobiDBLite consensus disorder prediction 284 310 - -
Ssu5g0042 455 CDD LAM 395 451 - -
Ssu5g0042 455 Gene3D - 387 453 IPR036388 -
Ssu5g0042 455 PANTHER LA-RELATED PROTEIN 1B 6 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0042 Ssu-Chr5 656975 659149 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0042 5 656975 659149 Ssu5g0042 5 656975 659149 ECH
Ssu5g0042 5 656975 659149 Ssu1g4000 1 98829166 98832814 PCT