Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0041 ATGGCTCAGACCACACCGAATCACACAGTGACCGTATCTGGGTGGGCAGCTCATGACTCTTCGGGCAAGATTACCCCCTACACCTTCAAAAGAAGGGAGAACGGCGTTAACGATGTGACCATAAAGATCTTGTATTGTGGGGTTTGCCACACTGACCTCCACCATGTTAAAAATGACTGGGGCATCACTATGTATCCTGTCGTACCGGGACACGAGATCGTTGGGGTGATTACTAAGGTGGGGAGCGATGTGAAGGGGTTCAAGGAAGGAGAGAGAGTGGGTGTTGGGTGTTTGGCGGCTACATGTTTGGATTGTGAATACTGCAAGACCGATCAGGAAAACTACTGCGAAAAGTTGCAATTTGTATACAACGGAATCTTCTGGGATGGCAGCATCACCTACGGTGGCTACTCCGAAATCTTGGTCGCGGATTACAGATATGTGGTACACATTCCGGAAAACCTACCAATGGATGCGGCGGCTCCTCTACTATGCGCTGGAATAACAGTGTTCAGTCCTTTGAAAGACCACGATTTGGTAGCATCAGCGGGGAAAAAGATTGGGGTGGTTGGTCTGGGAGGCCTTGGCCATATAGCCGTTAAATTTGGCAAGGCATTTGGCCACCATGTTACCGTCATAAGCTCTTCTCCCTCCAAAGAAGCTGAAGCTAAGGAGCGTTTGGGTGCTGATGATTTCATAGTCAGCTCCAACCCTAAACAATTACAGGCTGCAAGGAAAAGCCTAGATTTCATATTAGACACTGTGTCAGCAGAGCACTCTCTCTTGCCCATCTTGGAATTGCTCAAAATAAACGGTACCTTATTTTTGGTGGGTGCACCCGACAAGCCATTGCAATTGCCTGCTTTCCCATTGATATTTGGCAAGAGATCCGTGAAAGGTGGCATCATTGGGGGAATAAAAGAGACGCAGGAAATGTTGGACGTTTGTGGGAAGTACAATATCACGAGTGACATTGAGTTAATCACACCAGACAGAATCAACGAGGCTATGGAGCGCCTTGCTAAGAATGATGTCCGCTACCGTTTCGTCATTGACATTGCTGGCAGTTCCAACAACTAG 1080 0.4787 MAQTTPNHTVTVSGWAAHDSSGKITPYTFKRRENGVNDVTIKILYCGVCHTDLHHVKNDWGITMYPVVPGHEIVGVITKVGSDVKGFKEGERVGVGCLAATCLDCEYCKTDQENYCEKLQFVYNGIFWDGSITYGGYSEILVADYRYVVHIPENLPMDAAAPLLCAGITVFSPLKDHDLVASAGKKIGVVGLGGLGHIAVKFGKAFGHHVTVISSSPSKEAEAKERLGADDFIVSSNPKQLQAARKSLDFILDTVSAEHSLLPILELLKINGTLFLVGAPDKPLQLPAFPLIFGKRSVKGGIIGGIKETQEMLDVCGKYNITSDIELITPDRINEAMERLAKNDVRYRFVIDIAGSSNN 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0041 359 Gene3D - 15 353 - -
Ssu5g0041 359 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 321 IPR036291 -
Ssu5g0041 359 Gene3D - 166 323 - -
Ssu5g0041 359 Pfam Zinc-binding dehydrogenase 194 315 IPR013149 -
Ssu5g0041 359 Pfam Alcohol dehydrogenase GroES-like domain 37 150 IPR013154 -
Ssu5g0041 359 CDD CAD1 14 352 - -
Ssu5g0041 359 SUPERFAMILY GroES-like 17 177 IPR011032 -
Ssu5g0041 359 SMART PKS_ER_names_mod 19 351 IPR020843 GO:0016491
Ssu5g0041 359 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Ssu5g0041 359 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 6-RELATED 1 356 - -
Ssu5g0041 359 PANTHER ALDEHYDE REDUCTASE 1 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0041 Ssu-Chr5 621974 626974 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0041 5 621974 626974 Ssu5g0041 5 621974 626974 ECH