Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0037 ATGATGCAGGAAACGCTTCTTAATCTGTTACTCCGTAACTACCTACACTACAACCTGTATGATCAGGCAGAGAAGTTGAGGTCTAAGGCTCCACGATTTGAGGCACATTCAAACCAGCAGttctgtCGTTATCTCTTCTACCTTGGGAAAATTCGGACAATTCAGCTGGAGTATACCGATGCAAAAGAGTCTCTCCTACAGGCTGCTCGTAAAGCTCCCAGTGCAGCATGGGGTTTTCAAATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTATTATTGGGAGAAATACCTGAGAGGACTGTCTTTATGCAGAGAGGAATGGAGAAAGCTTTGAGGTCTTACTTTGAGCTTACTAATGCTGTTCGGATTGCTAAAAAGTTGAGGTTGAACTCTGCAAGTCCTGTTGCTGATGCTGAGAGCATTGTAGCAAGGGCTATCCATGATGGGGCTATTGATGCTTCATTGGACCATGCCAATGGGTGGATGGTCTCCAAGGAAACTGGAGATATTTACTCTACAAATGGGCCTCAGTTTGCATTTAATTCTCAGATTGCCTTTTGTCTTAACATGCACAATGAGGCTGTTCGCACACTGCGTTTTCCACCAAACGCACACAAGGAAAAGGAAAGTGCagagaaaaggagagagaggcAACAACAGGAGCAAGAACTGGCTAAGCATATCGCAGAGGAAGATGATGATGACTTCTGA 714 0.4286 MMQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPSAAWGFQIQCNKWAVIVRLLLGEIPERTVFMQRGMEKALRSYFELTNAVRIAKKLRLNSASPVADAESIVARAIHDGAIDASLDHANGWMVSKETGDIYSTNGPQFAFNSQIAFCLNMHNEAVRTLRFPPNAHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0037 237 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 98 188 - -
Ssu5g0037 237 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 2 125 - -
Ssu5g0037 237 MobiDBLite consensus disorder prediction 202 237 - -
Ssu5g0037 237 Pfam Proteasome regulatory subunit C-terminal 170 236 IPR013586 GO:0000502|GO:0030234|GO:0042176
Ssu5g0037 237 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 124 237 - -
Ssu5g0037 237 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 124 237 - -
Ssu5g0037 237 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 2 125 - -
Ssu5g0037 237 SMART PINT_4 98 188 IPR000717 -
Ssu5g0037 237 Pfam PCI domain 123 166 IPR000717 -
Ssu5g0037 237 Coils Coil 204 231 - -
Ssu5g0037 237 MobiDBLite consensus disorder prediction 202 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0037 Ssu-Chr5 596719 601002 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0037 5 596719 601002 Ssu5g0037 5 596719 601002 ECH
Ssu5g0037 5 596719 601002 Ssu1g4004 1 98871662 98874470 PCT