Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0032 ATGGGACTGGGGTTGTTTAAGGCGTTGTTTTGCTGCAACAAGCCCcatgaaattgacattttcgACTCCTCGGACTCCTCTCCCCAGCATACCGCCAAACAGTCTAGGAAAACCGAACCAAAGCCAAAGACAAAGCCAAATGCACGTGCTCCTCCCAAACATACCACCTCCACACAAATAGGACCAATTCTAGGAAAACCGTACGTTAACATACACCAAATGTACAAGATGAAGAAAGAACTAGGAAGCGGGCAGTCTGGTACCACCTATCTGTGTGTAGAGAGGACCACGGGGCGAGAGTATGCATGCAAATCCATCCCCAGGGGGAAGCTGTTGCGTCCGCAGGAAATTGAGGATGTGAGAAGAGAGGTTATGATTCTGCAGCATCTTTCAGGGCAACCCAACATTGTGGAATTCAGGGGAGCTTATGAGGACAGGCAGCACGTGCATCTTGTGATGGAGTTGTGCAGTGGGGGTGAACTCTTCGACCGCATCATTGCCAAAGGGAACTACTCCGAGCGTGAAGCAGCCACGGTGATGAGGCAGATTCTGAATGTGGTTCACGTCTGCCATTTCATGGGCGTAATGCATCGAGACCTCAAGCCAGAGAATTTCTTGTTAGCCACCAAGGCAGAGGATTCCCCTGTAAAAGCCACCGATTTTGGACTCTCCATTTTCATTGAGGAAgGTAAAGTGTATAAAGAAATTGTTGGAAGTGCATACTATGTGGCTCCAGAGGTGTTAAACCGGAATTATGGAAAGGAGATTGATGTGTGGAGCGCAGGAATCATTTTATACATCCTTCTAAGTGGGGTGCCTCCATTTTGGGCCGAAAACGAGAAAGGCATATTTGATTCTATTTTGGGAGGCAACCTTGATCTGGAGAGCGCACCATGGCCTTCTATTTCAGCTGCTGCAAAAGATTTGATCAGGAAGATGTTGAATTATGACCCTAAGAAACGCATTACAGCTGCTGAAGCCCTTGAACACCCGTGGATGAAGGAAGGTGGCGAAGCATCTGACAAGCCTATAGACAATGCTGTTTTAAGTAGGATGAAACAGTTCAGAGCAATGAACAAGATGAAGAAACTAGCTTTAAAGGTTATAGCAGAAAATCTTTCAGAGGAGGAAATCAAGGGCTTGAAACAAATGTTCAACAATATGGATACTGATCGCAGTGGCACAATCACATACGAGGAACTCAAATCTGGATTGACCAAATTGGGAAGCAAGCTTAGTGAATCTGAAATAAAGCAGCTAATGGACGCTGCTGATGTTGACAAGAGTGGGACTATTGACTATCAAGAGTTCATTACTGCCACAATAAACCGGCATAAACTGGAGAAGGAAGAGCATTTGTATAAGGCTTTTCAATACTTTGACAAGGATAACAGCGGATATATAACAAGAGATGAGCTTAGACAAGCTTTGACTGAATATCAAATGGGAGATGAAGCGACTATAGATGAAGTCATCAGTGATGTTGATACTGATAATGACGGGAAAATTAATTACCAGGAGTTTGTAGCTATGATGAGAAAGGGGGTCCTGGATATGGATGAGAAAGAGAAACCACGATAA 1581 0.4421 MGLGLFKALFCCNKPHEIDIFDSSDSSPQHTAKQSRKTEPKPKTKPNARAPPKHTTSTQIGPILGKPYVNIHQMYKMKKELGSGQSGTTYLCVERTTGREYACKSIPRGKLLRPQEIEDVRREVMILQHLSGQPNIVEFRGAYEDRQHVHLVMELCSGGELFDRIIAKGNYSEREAATVMRQILNVVHVCHFMGVMHRDLKPENFLLATKAEDSPVKATDFGLSIFIEEGKVYKEIVGSAYYVAPEVLNRNYGKEIDVWSAGIILYILLSGVPPFWAENEKGIFDSILGGNLDLESAPWPSISAAAKDLIRKMLNYDPKKRITAAEALEHPWMKEGGEASDKPIDNAVLSRMKQFRAMNKMKKLALKVIAENLSEEEIKGLKQMFNNMDTDRSGTITYEELKSGLTKLGSKLSESEIKQLMDAADVDKSGTIDYQEFITATINRHKLEKEEHLYKAFQYFDKDNSGYITRDELRQALTEYQMGDEATIDEVISDVDTDNDGKINYQEFVAMMRKGVLDMDEKEKPR 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0032 526 Gene3D Phosphorylase Kinase; domain 1 76 160 - -
Ssu5g0032 526 ProSitePatterns EF-hand calcium-binding domain. 425 437 IPR018247 -
Ssu5g0032 526 MobiDBLite consensus disorder prediction 32 46 - -
Ssu5g0032 526 Pfam EF-hand domain pair 381 441 IPR002048 GO:0005509
Ssu5g0032 526 Pfam EF-hand domain pair 450 513 IPR002048 GO:0005509
Ssu5g0032 526 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524
Ssu5g0032 526 ProSitePatterns EF-hand calcium-binding domain. 496 508 IPR018247 -
Ssu5g0032 526 ProSiteProfiles Protein kinase domain profile. 75 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0032 526 CDD STKc_CAMK 75 332 - -
Ssu5g0032 526 PANTHER SERINE/THREONINE-PROTEIN KINASE 41 519 - -
Ssu5g0032 526 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 29 41 519 - -
Ssu5g0032 526 ProSiteProfiles EF-hand calcium-binding domain profile. 412 447 IPR002048 GO:0005509
Ssu5g0032 526 SMART efh_1 487 515 IPR002048 GO:0005509
Ssu5g0032 526 SMART efh_1 416 444 IPR002048 GO:0005509
Ssu5g0032 526 SMART efh_1 380 408 IPR002048 GO:0005509
Ssu5g0032 526 SMART efh_1 452 480 IPR002048 GO:0005509
Ssu5g0032 526 SUPERFAMILY Protein kinase-like (PK-like) 75 340 IPR011009 -
Ssu5g0032 526 ProSiteProfiles EF-hand calcium-binding domain profile. 448 483 IPR002048 GO:0005509
Ssu5g0032 526 Gene3D - 341 516 - -
Ssu5g0032 526 Pfam Protein kinase domain 75 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0032 526 ProSitePatterns EF-hand calcium-binding domain. 461 473 IPR018247 -
Ssu5g0032 526 SMART serkin_6 75 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0032 526 Gene3D Transferase(Phosphotransferase) domain 1 161 340 - -
Ssu5g0032 526 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509
Ssu5g0032 526 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Ssu5g0032 526 MobiDBLite consensus disorder prediction 21 61 - -
Ssu5g0032 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Ssu5g0032 526 SUPERFAMILY EF-hand 372 513 IPR011992 -
Ssu5g0032 526 ProSiteProfiles EF-hand calcium-binding domain profile. 484 518 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0032 Ssu-Chr5 508554 514883 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu5g0032 Pkinase 1.8e-75 CL0016