Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0031 ATGGGAGTGGGGTTCTCTAAGGCGTTAACAGAGAAACCAGACCGTGATGAAATTCCCATTTCCTCCTCAGATTCCACTCCTCAACTCACCTACAAACAACCGAGGAAAAACAGCCTTCCAATTCCACGTCCACTTTCTCCTCCTAAGCCTACCCAATATTCGTCTTCACAAACAGAACCAGTACTAGGGAAAccgtacgttaaaataaagcaGATGTACGAGATGAAGGAAGAGCTGGGAAGGGGAAACTTTGGAGTCACTTATCTGTGTGTAGATAAGGTCACAGGACGAGAGTATGCATGCAAATCCATAGCAAAGGAGAAGCTGCAACAAAGTGGGGATGTGAGAAGAGAGGTTATGATTCTGCAGCATGTTTCAGGGCAACACAACATAGTGGAATTCAAGGGAGCTTATGAGGACAGGCAGAACGTGCACCTTGTGATGGAGCTGTGCAGTGGGGGTGAACTCTTCGACCGCATCATTGCCAAAGGGAACTACTCCGAGCGTGAAGCAGCCACAGTCATGAGACAGATTCTGAATGTGGTTCACGTCTGCCATTTCATGGGTGTAATGCATCGAGACCTCAAGCCAGAGAATTTCTTGCTCGCCACCAAGGACGACAATGCCACATTGAAACTCACGGATTTTGGATCCTCTGTCTTCCTTGAGGAAGGTAAAATGTGTACAGATATTGTTGGAAATGCATATTACGTGGCTCCAGAGGTTTTGAAACGGAGTTATGGAAAGGAGATAGATGTCTGGAATGCAGGAGTCATTTTATTCATCCTCTTGAGTGGGGTGCCTCCATTTAGGGCTGAAACCGAGAAAGGCATGTTTGATGCTATTTTGGGAGGTAAGTTAGATATGGATAGCGATCCATGGCCTTCTATTTCGGACGCTGCAAAAGATTTGGTCAGAAAAATGCTGACTTATGACCCTAAGGAACGCATTACAGCTGCTGATGGCCTTGAGCATCCATGGTTGAAGGAAGCTGGTGAAGCATCAGACAAGCATCCAGACAGAGCTGTTTTAATTAGGATGGAACGGTTCAGAGCAATGAACCAGATGAAGAAGCTTGCTTTGAAGGTAATAGCAGAACGTCTTTCAGAGGAAGAAACAAAGGGCCTGAGACAAATGTTCAACAATATGGATACTGATGGCAGTGGCACAATCACATTTGAAGAACTCAAATCAGGATTGTCCAGATTGGATTCCCAGCTTAGTGAATCTGAAATAAGGCAGCTAATGGATGCTGCTGATATTGACAAGAATGGGACTATTGACTACTTTGAATTCATTGCTGCCACTATGGATCGGCATAAACTGGAGAAGGGAGAGAATTTGTTTAAGGCTTTTCAATACTTCGACAAGGATGAGAACGGTTATATAACAAGAGATGAACTTAGAGAAGCAATGACGGAACACCAAATGGGAGATGAAGCTGCTGTAGACGAAGTCTTCGACGACGTTGACTCTGACAAAGACGGGAAAATTAACTATGACGAGTTTATGACCATGATGAGAAATGAATGCTGA 1536 0.4401 MGVGFSKALTEKPDRDEIPISSSDSTPQLTYKQPRKNSLPIPRPLSPPKPTQYSSSQTEPVLGKPYVKIKQMYEMKEELGRGNFGVTYLCVDKVTGREYACKSIAKEKLQQSGDVRREVMILQHVSGQHNIVEFKGAYEDRQNVHLVMELCSGGELFDRIIAKGNYSEREAATVMRQILNVVHVCHFMGVMHRDLKPENFLLATKDDNATLKLTDFGSSVFLEEGKMCTDIVGNAYYVAPEVLKRSYGKEIDVWNAGVILFILLSGVPPFRAETEKGMFDAILGGKLDMDSDPWPSISDAAKDLVRKMLTYDPKERITAADGLEHPWLKEAGEASDKHPDRAVLIRMERFRAMNQMKKLALKVIAERLSEEETKGLRQMFNNMDTDGSGTITFEELKSGLSRLDSQLSESEIRQLMDAADIDKNGTIDYFEFIAATMDRHKLEKGENLFKAFQYFDKDENGYITRDELREAMTEHQMGDEAAVDEVFDDVDSDKDGKINYDEFMTMMRNEC 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0031 511 ProSitePatterns Protein kinases ATP-binding region signature. 79 106 IPR017441 GO:0005524
Ssu5g0031 511 ProSiteProfiles EF-hand calcium-binding domain profile. 371 406 IPR002048 GO:0005509
Ssu5g0031 511 ProSiteProfiles Protein kinase domain profile. 73 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0031 511 PANTHER SERINE/THREONINE-PROTEIN KINASE 38 510 - -
Ssu5g0031 511 ProSiteProfiles EF-hand calcium-binding domain profile. 443 477 IPR002048 GO:0005509
Ssu5g0031 511 SMART serkin_6 73 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0031 511 SUPERFAMILY EF-hand 367 507 IPR011992 -
Ssu5g0031 511 ProSitePatterns EF-hand calcium-binding domain. 420 432 IPR018247 -
Ssu5g0031 511 Gene3D Phosphorylase Kinase; domain 1 75 155 - -
Ssu5g0031 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Ssu5g0031 511 MobiDBLite consensus disorder prediction 1 58 - -
Ssu5g0031 511 SMART efh_1 411 439 IPR002048 GO:0005509
Ssu5g0031 511 SMART efh_1 482 510 IPR002048 GO:0005509
Ssu5g0031 511 SMART efh_1 447 475 IPR002048 GO:0005509
Ssu5g0031 511 SMART efh_1 375 403 IPR002048 GO:0005509
Ssu5g0031 511 ProSiteProfiles EF-hand calcium-binding domain profile. 478 511 IPR002048 GO:0005509
Ssu5g0031 511 CDD STKc_CAMK 73 327 - -
Ssu5g0031 511 MobiDBLite consensus disorder prediction 20 35 - -
Ssu5g0031 511 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 29 38 510 - -
Ssu5g0031 511 ProSitePatterns EF-hand calcium-binding domain. 384 396 IPR018247 -
Ssu5g0031 511 ProSitePatterns EF-hand calcium-binding domain. 491 503 IPR018247 -
Ssu5g0031 511 Pfam Protein kinase domain 73 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0031 511 SUPERFAMILY Protein kinase-like (PK-like) 56 351 IPR011009 -
Ssu5g0031 511 Pfam EF-hand domain pair 376 436 IPR002048 GO:0005509
Ssu5g0031 511 Pfam EF-hand domain pair 447 508 IPR002048 GO:0005509
Ssu5g0031 511 Gene3D - 369 437 - -
Ssu5g0031 511 Gene3D - 346 507 - -
Ssu5g0031 511 ProSiteProfiles EF-hand calcium-binding domain profile. 407 442 IPR002048 GO:0005509
Ssu5g0031 511 Gene3D Transferase(Phosphotransferase) domain 1 156 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0031 Ssu-Chr5 492245 496700 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu5g0031 Pkinase 2.3e-72 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0031 5 492245 496700 Ssu5g0031 5 492245 496700 ECH