LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g0024	ATGGGTTCTCTCTCTGCCCTGCACCAACCTCTCCAATATCCCACTGCTCGCAGAGACGACTCCGTCGTTGACGACTATCACGGCGTCAAGATTGCCGATCCTTACCGGTGGCTCGAGAATCCCGAGGCGGAGGAAGTGAAAGAGTTCGTGCAGAAACAGGTTGCGCTGACGGATTCGGTGCTGCAGAGGTGCGAGTGTAGGCCGAAACTCGCGGAGACAATAACCAAGTTGTTTGATCATCCTCGTTACAACGCTCCTTTCAGGCGAGGGAATAAGTACTTTTACTTCCACAACACGGGTCTTCAGTCTCAGAGCGTGCTTTATGTTCAGGACACTTTGGAGGCTCAGGCAGAGGTTTTGCTCAATCCTAATGCGCTCAGTGAAGATGGCACCGTCTCACTCAACAGGGTATCGGTGAGCCAAGATGCTAACTTCTTGGCTTATGCACTTAGTTCCAGCGGCAGCGACTGGGTCACAATAAAGTTGATGCGTATTCAACACAAGACTGTCCAGCCTGATACTTTGTCGTGGGTCAAGTTTTCCTCTATTAGTTGGACGCATGATAGCAAAGGTTTCTTTTACAGCCGCTATCCAGCACCAAAGGATGGAGAAGTAGTGGATGCTGGGACTGAGACTAATGCAAACCTTCATCATGAGCtctattatcattttttgggTACTGATCAATCAGAAGATATTCTGTGCTGGAGAGATCCTGAGAACCCAAAATATTTGTTTGGAACAAGTGTTACTGAGGACGGGAAGTATGTTCTTCTCTATATTGAAGAAGGGTGTGATCCAGTTAACAAGCTTTACTACTGTGACTTGTCTGAACTTCCAAACGGTCTGGATGGTTTTCAGAATGAAAATTCCCTCCTCCCATTTGTCAAGCTTGTTGATGATTTTGATGCACAATATCAAGCCATTGCAAATGATGACACCttgtttacatttttaactaataaagatgctccaaaatataaaatagtccGAGTAGATTTGAAAGAACCAAATGCTTGGACTGATGTTATCAAAGAGTCTGAAAAAGATGTACTTGAGTCAGCACGTGCTGTAAATGGTAACCAACTGATTGTGAGCTACTTGAGTGATGTGAAATATGTTCTGCAAGTAAGAGACTTGGAAACAGGTTCCTTGCGGCATCAATTACCAATTGACATTGGCACAGTTGGTGAAATTTCTGCACGCCGTGAAGATACCGTGGTTTTCATTGGTTTTACAAGCTTTTTGACTCCTGGAATCATATATCAGTGCGACCTGGGAACACAAATTCCTGATATGAAGATATTTCGCGAGATTGTCGTTCCTGGGTTTGATCGCTCTGAGTTTCATGTCAatcagGTTTTTGTGCCTAGTAAAGATGGTACCAAGATTCCAATTTTCATTGTTGCCAGAAAGGATATTGTTTTGGATGGTTCACACCCTTGTCTGTTATATGGATATGGTGGTTTTAACATCAGTCTTACACCAAATTTCAGCATCAGCCGTAATGTACTTGCCAGACATTTAGGTGCTGTTTTCTGCCTAGCAAATATTCGTGGTGGTGGAGAATATGGGGAGGAATGGCATAAAGCTGGCTCCCTTGCAAATAAGCAAAACTGCTTTGATGACTTCATTTCAGCAGCTGAATACCTTGTATCTGCTGGTTATACCCAACCCAGAAAGTTATGTATCGAGGGTGGAAGCAATGGTGGACTTCTTATCGGCGCTTGCATAAATCAGAGACCTGATCTTTTTGGTTGTGCACTGGCTCATGTTGGTGTTATGGACATGCTACGGTTCCACAAATTTACCATAGGTCATGCTTGGACCTCAGATTTTGGTTGTTCAGACAAGGAGGAAGAATTTCATTGGCTAATCAAGTACTCACCATTGCATAACGTCCGGAGACCTTGGGAACAGCATCCTAATCAGTCAATTCAGTACCCATCAACAATGCTGTTGACGGCTGATCATGATGATCGTGTTGTGCCATTGCATTCGTTAAAGCTATTGGCGacAATGCAGTATGTCCTCGTTACTAGCCTTGATAAGAGTACCCAGACGAACCCTATAATTGGTCGCATTGAATGCAAGGCTGGGCATGGAGCTGGGCGTCCAACACAGAAATTGATAGACGAAGCTGCTGACCGTTACAGTTTCATGGCCAAAATGTTAGACGCCCATTGGATTGAATAG	2196	0.4326	MGSLSALHQPLQYPTARRDDSVVDDYHGVKIADPYRWLENPEAEEVKEFVQKQVALTDSVLQRCECRPKLAETITKLFDHPRYNAPFRRGNKYFYFHNTGLQSQSVLYVQDTLEAQAEVLLNPNALSEDGTVSLNRVSVSQDANFLAYALSSSGSDWVTIKLMRIQHKTVQPDTLSWVKFSSISWTHDSKGFFYSRYPAPKDGEVVDAGTETNANLHHELYYHFLGTDQSEDILCWRDPENPKYLFGTSVTEDGKYVLLYIEEGCDPVNKLYYCDLSELPNGLDGFQNENSLLPFVKLVDDFDAQYQAIANDDTLFTFLTNKDAPKYKIVRVDLKEPNAWTDVIKESEKDVLESARAVNGNQLIVSYLSDVKYVLQVRDLETGSLRHQLPIDIGTVGEISARREDTVVFIGFTSFLTPGIIYQCDLGTQIPDMKIFREIVVPGFDRSEFHVNQVFVPSKDGTKIPIFIVARKDIVLDGSHPCLLYGYGGFNISLTPNFSISRNVLARHLGAVFCLANIRGGGEYGEEWHKAGSLANKQNCFDDFISAAEYLVSAGYTQPRKLCIEGGSNGGLLIGACINQRPDLFGCALAHVGVMDMLRFHKFTIGHAWTSDFGCSDKEEEFHWLIKYSPLHNVRRPWEQHPNQSIQYPSTMLLTADHDDRVVPLHSLKLLATMQYVLVTSLDKSTQTNPIIGRIECKAGHGAGRPTQKLIDEAADRYSFMAKMLDAHWIE	731

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g0024	731	Pfam	Prolyl oligopeptidase family	497	726	IPR001375	GO:0006508\|GO:0008236
	Ssu5g0024	731	Pfam	Prolyl oligopeptidase, N-terminal beta-propeller domain	14	428	IPR023302	GO:0004252
	Ssu5g0024	731	ProSitePatterns	Prolyl endopeptidase family serine active site.	543	573	IPR002471	GO:0004252\|GO:0006508
	Ssu5g0024	731	Gene3D	-	81	440	-	-
	Ssu5g0024	731	PANTHER	PROLYL ENDOPEPTIDASE	1	731	-	-
	Ssu5g0024	731	PANTHER	PROLYL OLIGOPEPTIDASE-LIKE PROTEIN	1	731	-	-
	Ssu5g0024	731	SUPERFAMILY	alpha/beta-Hydrolases	451	675	IPR029058	-
	Ssu5g0024	731	SUPERFAMILY	Peptidase/esterase 'gauge' domain	9	429	-	-
	Ssu5g0024	731	Gene3D	alpha/beta hydrolase	22	721	IPR029058	-
	Ssu5g0024	731	PRINTS	Prolyl oligopeptidase serine protease (S9A) signature	481	499	IPR002470	GO:0004252\|GO:0006508
	Ssu5g0024	731	PRINTS	Prolyl oligopeptidase serine protease (S9A) signature	508	532	IPR002470	GO:0004252\|GO:0006508
	Ssu5g0024	731	PRINTS	Prolyl oligopeptidase serine protease (S9A) signature	536	555	IPR002470	GO:0004252\|GO:0006508
	Ssu5g0024	731	PRINTS	Prolyl oligopeptidase serine protease (S9A) signature	648	670	IPR002470	GO:0004252\|GO:0006508
	Ssu5g0024	731	PRINTS	Prolyl oligopeptidase serine protease (S9A) signature	566	586	IPR002470	GO:0004252\|GO:0006508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g0024	Ssu-Chr5	331960	336670	Wgd

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu5g0024	5	331960	336670	Ssu5g0024	5	331960	336670	ECH
	Ssu5g0024	5	331960	336670	Ssu1g4024	1	99255220	99261563	PCT