Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0013 ATGCATATGCATGGATTCAGAGCAAGGGTTTTTCTGCGCTCAATTTCACTTTGTAAATCAAAGTGGCATCATCACCATGTCCGTGGAGGTCAAAtccatttctctcaaaatctcacCTTCACAACAGGTCCTGAATTTATGGAATTTGTAGCAGGACCGTCTGTGCAGATGCAAGTTGTCAAGGCACTCTGCTCGGGTGAGAGAAGGAAGGCTTCAGACTTACTTTTGGATTTTGGTTCCAGAAGCCACTCATTAACAGCTGAtgattttgttgatatttttaagtacTGTGCACGGTCTCCTGATCCATTGTTTGTTATGGAGATTTGGAGATTCATGGAATTAAAAGGTGTTAGCATGAACAATATGTGCTCATCTCTTATGATACAGGCCCTTTGTAAAGGGGGTTACTTGGAAGAGGCCTTTGATATCATGGATTTTCTTGGAGAAAGTCAATGTCTCTATCCAGTTCTCCCACTGTACAATAGTCTCTTAAGATCCTGCACGAAAATGCAGAGTATTATTCAAGCAAGCAAATGTTTGGACTTAATGGAAAAGAAGATGGTAGGAAAGAGTGAAGTTACATATACTGAGCTTCTCAAGCTTGCAGTTTTGCAGAAAAACTTGCCTGCAGCCCATCTCATTTGGCaggaatatattaaaaactataacacGAGTATCATTGCTTTGCGTAAATTCATTTGGTCATTTACAAGGTTAGGAGATTTAAAATCTGCATATAAAACATTACAACAAATGGTGTCATTAGGCATCAGGGGAAACATTTCTATTGCTAGAACAGTTTATGGGAAGTTGTATTCTACTAGATTGGACATCCCTGTGCCTTCAAATAAGGGGCTAGGCTCAACCATATTGGACTTGGAGGAGAATGAAAAATTGGACTCTTGCATACACCCTCCTCTTATGTATTTACCTGACAGTATTTCTGCAACTATAGAGCAACAGATTATATGTGTGGGGAATAAAAAAGCTAAGAGTGCTAAATTAGATGGGCTGAATGGACAAAAACACTTGCTGCTTATGAAGGTATTGAGGTGGTCCTTTAATGATATGATACATGGATgtgcaaaacaaaagaattatatGCTTGCAAGGAAGCTTATGTTACAGATGGAAAATCTTGGTTTGCAGCCATCCAGCCATACATATGATGGCATTATTAAAGCAGTTGTTTCTCATAGAAGTTTTGGGGATGCCATAGGAGTGTTGAAAAAAATGCAGCAGAAGAATTTGAAGCCATATGATTCAACTCTAGCAACACTTTCAATCATTTGCAGCAAAGCACTGCAACTAGATTTAGCTGAGGCTTTACTGAATCAGATTTCTGAATGTCTATATCCACATCCTTATAATGCTTTGCTAGCATCATGCAATGCACTGAACCAACCTGAACGTGCTGTGCAAGTGTTTGCTAAGATGAAGCAGAAAAAAGTTTTACCTAATATCAGGACATGTGAGCTTCTATTTTCGTTATTTGGCGTTGTAAATGCCCCATATGAAGACAGTAATATGCTGTCACAGGTGGATGCTGCTAAAAGAATAAATGCTATAGAAAAGGATATGGCCAAAAATGGCCTTCAGCACAGTCATCTTTCAATGAAAAACTTATTAAGAGCCCTTGGAGAAGAAGGGATGATAAGAGAGCTGATTCAGTATTTACATGTGGCAGAGAATCTTTTCATTTATAGAAACCCTTCATTGGGAACACACATGTACAACACAGTGTTACATTATCTTGTTGAAGCCAAAGAAAGTGACATGGCGATTGCAATTTTCAAGAAGATGAAGTTATTTGGCTGCCACCCTGATTCTGAAACATACAATATAATGATTGACTGTTGTAGCATCCTAAAAAGTTACAGATCTGCTTGTGTGCTGATTTCAACGATGATACGGAAAGGGTTTTGTCCAGTGACTTGTACATATACCGCTATCATTAAGATTTTGTTGGAAGATGAGAACTTTCATGAAGCCCTGAATCTTTTGAAACAAGTCATATTGGATGGCATCCAACCTGACATACTGCTGTTTAATACATTTCTTCAACAAGCATGTTACAAGGGAAGGATCGATTTAATTGAGTTTATTGTGGAGTGTATGCACCGAGAGAAAGTTCCCCCTGATCCAGCAACATGCGGCTATGTCTTCTCTGCGTATGTAAATTCTGGTTTTCACAATACAGCAATTGAAGCGTTGCAGGTTTTAACTTTGCGTATGATGTCTGAAGATGGCAACATActtagagagaagaaaaaaattgtgaatgaaTTCATCCTATCTGAAGATTTGGCTGTTGAGTCACAGatacttaaattatttgaagATTCTGAAGATGAACTTGCAGTTGGGTTGTTGAATTTAAGATGGTGTGCCGTAGCTGGGTTCCCAATCTGCGAGTCAGCTGATCAAAGCCTATGGGCTAAAAGACTGAAAGGAAAGCAAATGTGGGCCTCTGAGTCCTATCAAGACACCCAGATAGATACAATTGCTTGA 2514 0.3735 MHMHGFRARVFLRSISLCKSKWHHHHVRGGQIHFSQNLTFTTGPEFMEFVAGPSVQMQVVKALCSGERRKASDLLLDFGSRSHSLTADDFVDIFKYCARSPDPLFVMEIWRFMELKGVSMNNMCSSLMIQALCKGGYLEEAFDIMDFLGESQCLYPVLPLYNSLLRSCTKMQSIIQASKCLDLMEKKMVGKSEVTYTELLKLAVLQKNLPAAHLIWQEYIKNYNTSIIALRKFIWSFTRLGDLKSAYKTLQQMVSLGIRGNISIARTVYGKLYSTRLDIPVPSNKGLGSTILDLEENEKLDSCIHPPLMYLPDSISATIEQQIICVGNKKAKSAKLDGLNGQKHLLLMKVLRWSFNDMIHGCAKQKNYMLARKLMLQMENLGLQPSSHTYDGIIKAVVSHRSFGDAIGVLKKMQQKNLKPYDSTLATLSIICSKALQLDLAEALLNQISECLYPHPYNALLASCNALNQPERAVQVFAKMKQKKVLPNIRTCELLFSLFGVVNAPYEDSNMLSQVDAAKRINAIEKDMAKNGLQHSHLSMKNLLRALGEEGMIRELIQYLHVAENLFIYRNPSLGTHMYNTVLHYLVEAKESDMAIAIFKKMKLFGCHPDSETYNIMIDCCSILKSYRSACVLISTMIRKGFCPVTCTYTAIIKILLEDENFHEALNLLKQVILDGIQPDILLFNTFLQQACYKGRIDLIEFIVECMHREKVPPDPATCGYVFSAYVNSGFHNTAIEALQVLTLRMMSEDGNILREKKKIVNEFILSEDLAVESQILKLFEDSEDELAVGLLNLRWCAVAGFPICESADQSLWAKRLKGKQMWASESYQDTQIDTIA 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0013 837 Pfam PPR repeat 161 187 IPR002885 -
Ssu5g0013 837 Pfam PPR repeat 126 147 IPR002885 -
Ssu5g0013 837 Pfam PPR repeat family 354 397 IPR002885 -
Ssu5g0013 837 Pfam PPR repeat family 576 621 IPR002885 -
Ssu5g0013 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Ssu5g0013 837 TIGRFAM PPR: pentatricopeptide repeat domain 354 386 IPR002885 -
Ssu5g0013 837 TIGRFAM PPR: pentatricopeptide repeat domain 647 681 IPR002885 -
Ssu5g0013 837 TIGRFAM PPR: pentatricopeptide repeat domain 613 644 IPR002885 -
Ssu5g0013 837 TIGRFAM PPR: pentatricopeptide repeat domain 457 488 IPR002885 -
Ssu5g0013 837 TIGRFAM PPR: pentatricopeptide repeat domain 578 611 IPR002885 -
Ssu5g0013 837 Gene3D Tetratricopeptide repeat domain 509 659 IPR011990 GO:0005515
Ssu5g0013 837 Gene3D Tetratricopeptide repeat domain 660 766 IPR011990 GO:0005515
Ssu5g0013 837 Gene3D Tetratricopeptide repeat domain 435 507 IPR011990 GO:0005515
Ssu5g0013 837 Gene3D Tetratricopeptide repeat domain 345 434 IPR011990 GO:0005515
Ssu5g0013 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Ssu5g0013 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Ssu5g0013 837 Pfam Pentatricopeptide repeat domain 457 500 IPR002885 -
Ssu5g0013 837 Pfam Pentatricopeptide repeat domain 668 728 IPR002885 -
Ssu5g0013 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 575 609 IPR002885 -
Ssu5g0013 837 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 820 - -
Ssu5g0013 837 Gene3D Tetratricopeptide repeat domain 61 232 IPR011990 GO:0005515
Ssu5g0013 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 610 644 IPR002885 -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0013 5 192864 202557 Ssu5g0013 5 192864 202557 ECH