Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0012 ATGTCGGAGAAGTTCCTGACCGTGCCGCCATTTGAGTGCGCCTGGAGAGAGGATTTGAAATTCCGGGAAGCAGGTCGGGGTTGCGTGGCCTTCGAAGCATTCGCCAGCAACGATGTTACACTGGTTTTCCGGGAGAATGTGGGAAGCCAGGGCTACCATTATAAAAGAGATAGCAGTCCTCACTACACAATCATATTGGGGAGTCACAGGAATCGACGACTCAGAATTGAGGTCAATGGAAAAACTGCTGTCGACGTGGCAGGGGTTGGCCTTTGCTGTTCTTCCTCCTTTCAGAGTTATTGGATCAGCATCTATGATGGCTTGATTAGCATAGGCAATGGGAAATACCCTTTCCAGGATGTTGTTTTCCAGTGGTTGGATTCTTATCCCAATTGTAATGTTCAGTATATTGGCCTCAGCAGCTGGGATAAACATGTTAAGTATAGAAATGTTAATGTCTTGTCTTTAACACACACTCATATGCCCCTCTGGAAGCATGTCGTTTTTGGTGATTATCACGTTGAGGACGAGGTTGATGCAGCAGACTGTTGCAATTACAAACACATGGATTATGACAAATGGGGGCTCAAAAATTTTCTCGAGAGTTGGGACTTGTCTGACGTGATATTCATCGTCAGTGAAGAGGAAAAACCCGTTCCTGCTCACAAGGCAATTTTAGCTGCATCTGGAAACTTTTCTCTGTGCTCCTCCTCCTTTGTCATCAAAGTACCCACAGTATCTTATCTGCTTTTCCATGCACTGCTTCACTACATCTACGCTGGCTGGACCCAGATTCCACAGGAACAACTTGGTTCTTTGAGGGCTTTAAGTCTACAGTTTGAAGTGATGCCACTGGTGAAGCAGTGCGAAGAGACTATGGAACGGTTTAAGCTAGATAAGAAGTTGTTTGACACGGGCAAGAATGTGGAGTTAACATATCCATCTATCCGACCTCATTGTTCAACTTTTCCCTCACTTCCTGTCAGCATTCAGCAACTGagacaattgaaattaacaggCCAGTACAGTGATGTAAACATCTATATTGAGAGTTATGGCTTCATTGCACAAGCTCATAAAATTGTTCTCAGCTTATGGAGTATCCCCTTTGCTCGGATGTTCACAAATGGGATGAGTGAGAGCATGTCCTCGGAGGTTACTTTAAGGGATGTGCCACCAGAAGCTTTCAAGGCTTTGCTTGTCTTTTTATATGATGGGCAATTGAATGACAAAGTTATAGATTCTGGTGCTTTGTTGCTCCAACTCCTTTTATTAGCTGATCAATTTGGAGTGActtttcttcaacaagaatgCTGCAAAATGCTTTTAGAATGTCTCTCAGAGGACTCAGTATGTCCACTCCTCCAAGTGGTTTCTTCAATCCCATCATGTAGACTTATTAAAGAAACATTGGAGAGGAGAATTTCCATGAACTTCGACTATTATATCAGTGCAAGTACTGACTTTGTTTTGTTAGATGAGACAACTTTAATCAATATCATTAAGCATCCGGATCTGACAGTAACATCTGAAGAGAAAGTTCTTAATGCAATCCTAATGTTTGGCATAAATGCAAAAGAGTTGTTTGGATGGGAAGTGGTGGATCAGTTAATAGTAAATTCAAAACCTGAACTCCTTTTTGGAGAGAGGCTTCAGTTAGTTTATGACCTGTTGCCGTTTGTGCGATTTCCACTACTACAGTATTCCTTACTTGAGAAGTTGCAGAATAGCAACATTGACCGGCATATTCCTGTTTTCCAAAATCTTGTTAATGAGGCTATCAATTTTGTTAAGTGTGGGTTGGCAGGGCCAGAACATGAAGAGAATGTTAGATTCCAACATAGACGATCCAGTTACAGGGAACTCCAATACATTTGTGATGGGGACGACCATGGAGTTTTGTACCTTGCCGGCACATCCTATGGTGAACACCCGTGGGTTAATCCTCTTTTGGCAGAGCCAAGGAAAATTACCATCACAGCCAGCAGCCCCCACTCAAGATACACTGATCCCAAGGTTTTGGTCTCAAGAACCTACCAGGGAACATGTTTTGCTGGACCTCGATTGGAAAATGGACAGAACTGTACCTGGTGGATGGTTGATCTTGGCCAAGATCATCAGCTTATGTGCAACTACTATACCCTGAGGCAGGACGGTTCTAAGGCCTTCCCGAGATGTTGGAATATTCAGGGCTCACTGGACGGGAAGAGCTGGACGAACTTGAGAGTCCATGAAAATGATCGGACTGTGTGCAAACCTGGTCAGTTTGCCTCTTGCCCCATAATTGGCCCCAATGCTCTGCTTCCCTTCAGGTATTTTCGGGTTGTTCTCACTGGACCCACTACCGATGCCACCAATCCCTGGAGTTTCTGCATTTGTTACTTGGAACTATATGGCTACTTCCTCTAA 2409 0.433 MSEKFLTVPPFECAWREDLKFREAGRGCVAFEAFASNDVTLVFRENVGSQGYHYKRDSSPHYTIILGSHRNRRLRIEVNGKTAVDVAGVGLCCSSSFQSYWISIYDGLISIGNGKYPFQDVVFQWLDSYPNCNVQYIGLSSWDKHVKYRNVNVLSLTHTHMPLWKHVVFGDYHVEDEVDAADCCNYKHMDYDKWGLKNFLESWDLSDVIFIVSEEEKPVPAHKAILAASGNFSLCSSSFVIKVPTVSYLLFHALLHYIYAGWTQIPQEQLGSLRALSLQFEVMPLVKQCEETMERFKLDKKLFDTGKNVELTYPSIRPHCSTFPSLPVSIQQLRQLKLTGQYSDVNIYIESYGFIAQAHKIVLSLWSIPFARMFTNGMSESMSSEVTLRDVPPEAFKALLVFLYDGQLNDKVIDSGALLLQLLLLADQFGVTFLQQECCKMLLECLSEDSVCPLLQVVSSIPSCRLIKETLERRISMNFDYYISASTDFVLLDETTLINIIKHPDLTVTSEEKVLNAILMFGINAKELFGWEVVDQLIVNSKPELLFGERLQLVYDLLPFVRFPLLQYSLLEKLQNSNIDRHIPVFQNLVNEAINFVKCGLAGPEHEENVRFQHRRSSYRELQYICDGDDHGVLYLAGTSYGEHPWVNPLLAEPRKITITASSPHSRYTDPKVLVSRTYQGTCFAGPRLENGQNCTWWMVDLGQDHQLMCNYYTLRQDGSKAFPRCWNIQGSLDGKSWTNLRVHENDRTVCKPGQFASCPIIGPNALLPFRYFRVVLTGPTTDATNPWSFCICYLELYGYFL 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0012 802 Gene3D Potassium Channel Kv1.1; Chain A 325 474 IPR011333 -
Ssu5g0012 802 SUPERFAMILY POZ domain 194 294 IPR011333 -
Ssu5g0012 802 PANTHER OS05G0345500 PROTEIN 3 801 - -
Ssu5g0012 802 SUPERFAMILY POZ domain 330 443 IPR011333 -
Ssu5g0012 802 SMART BACK_2 452 575 IPR011705 -
Ssu5g0012 802 CDD BTB_POZ_ZBTB_KLHL-like 205 280 - -
Ssu5g0012 802 Pfam Farnesoic acid 0-methyl transferase 50 146 IPR022041 -
Ssu5g0012 802 SMART BTB_4 343 446 IPR000210 GO:0005515
Ssu5g0012 802 SMART BTB_4 206 297 IPR000210 GO:0005515
Ssu5g0012 802 Gene3D - 655 800 - -
Ssu5g0012 802 Gene3D Potassium Channel Kv1.1; Chain A 194 308 IPR011333 -
Ssu5g0012 802 Gene3D - 475 597 - -
Ssu5g0012 802 ProSiteProfiles BTB domain profile. 206 267 IPR000210 GO:0005515
Ssu5g0012 802 Pfam BTB And C-terminal Kelch 458 521 IPR011705 -
Ssu5g0012 802 Pfam BTB/POZ domain 196 294 IPR000210 GO:0005515
Ssu5g0012 802 Pfam BTB/POZ domain 334 444 IPR000210 GO:0005515
Ssu5g0012 802 CDD BTB_POZ_ZBTB_KLHL-like 342 409 - -
Ssu5g0012 802 Pfam F5/8 type C domain 659 782 IPR000421 -
Ssu5g0012 802 ProSiteProfiles BTB domain profile. 343 412 IPR000210 GO:0005515
Ssu5g0012 802 SUPERFAMILY Galactose-binding domain-like 657 801 IPR008979 -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0012 5 180288 187210 Ssu5g0012 5 180288 187210 ECH