Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0007 ATGGTCTCTGCAACAAACCCTAACCCTAAAAATGTGTACCACATCGGAGGTCTGCAAGTGGAATTTCCTTACCAACCGTACGGGTCTCAGTTTGCATTTATGGGTAGAGTAATCTCCACCCTCAATCGAGCTCAGAGAGAAGGCCATTGTCACGCGTTGCTCGAGTCTCCAACCGGTACTGGCAAGTCCCTTTCGCTTCTCTGTTCCTCTCTCGCTTGGCAGCAccattataaatctaaacagCACCACCTCAAGCCCGCCCCGGAGGCAACCACCGATCCTCTCGCTTATGGCGGCGGATTTGTTCCCGAGGAGCTTTCACTTTCTTCTGCATCAGAAAATCTGGACCGTACGCAATCCGAGGTCAACAACAAGaagcagaagaaaaaggaagcaCCGACTATATATTATGCCTCGAGAACGCACTCACAAATTTCTCAAGTGATTCGTGAATTACGGAAAACTGCATACAGGGTGCCTATGGCTGTGTTGGCATCACGGAAACATTACTGCACAAATAAGAATATAGTCGGCAAAGAGAATCTCGATGAAGAATGTAAACTTTTATTGAAAGATCAGGCAACAGGGTGTCCAGAATTCAAAAATGCACATAAAGTCAAAGGTCATCCATCCCTTCAGAAAGGAGGATGCAATGAGGTGCATGACATAGAAGATCTTGTAAAAGTTGGACAAGTGGTAAAAGGTTGCTCTTATTATGCTGCTCGTTCTATGTCAGATGACGCACAGTTGGTATTTTGTCCATATAGCTACATCATTAATCCAGTCATTCGGGCAGCAATGGATGTGGATATTAAAGAAGCCATAGTGATTCTTGATGAAGCTCACAATATAGAGGACATTGCTCGTGATGCTGGCAGTGTGGATATTGACGAGGATGTTTTGGATAAACTACAAATGGAGCTCCAGCAACTATGTTCTATTAATGCTGCAATTTACCAACCGCTATATGAAATGGCACAGGGCCTTGCTAGTTGGATGGAACAGAAGAAAAACAAGCTAGAAAAACGTGATTTTCAGCACTATGTGTCGTGTTGGACTGGTGATAAGGCTTTAAGAGAGCTTGAAGAAGCAAATATTTCAAAGCAGTGTTTCCCTATCTTGCTAGAATGTGCTACCAAGGCAATCAAAATTGCTACGGACTTGGAGACGGATGCACAGCATTTAAGTGGCATGTCGGTGATAACTTTGGAAGGCTTATTCTCATCACTAACTTATTTCTTCTCAAGAAATGGATCTCACATGTTGGATTATCAGCTTGCTCTTCAGCGATGTGTTAGAAAGGAAACTGGAAGAGCTTTTGGAAACTGGACATACACTTTAAGTTTATGGTGCTTGAATCCAGCAGTTGTGTTTAGAGATGTTGCTGATCTTTCTTTATCAGTCATCTTGACTTCTGGGACACTGTCACCAATGGCATCATTCTCTTCTGAGCTTGGAGTTCATTTTGAAACTAGTCTAGAAGCGCCTCATGTAATTGATGTTGACTCACAGGTGTGGCCTGCTATAATCTCCACTGGTCCTGGCAATTATCCTTTGAATGCAAGTTATAAAACAGCAGATGGATATGCATTCCAGGATGCAGTTGGAAAATCTTTAGAGGAAATCTTCAAGATTGTTCCAGGTGGATGTCTTGTGTTCTTTCCAAGTTATAAATTGATGGAAAAATTATGCAACCGTTGGTCTGAAACAGGTCAATGGTCTCGACTAAATGTAGAAAAGTCTCTTTTTGTTGAGCCAAGGGGAGGAAGCCAAGATGATTTTGAACTTGCATTAAAGGGGTATTATGATTCAATTCATCATGGCAAAAGACCTGCATTGGGAAGGAAAAGAAGGATTAAGAAAATTGATCTAAATCATGTTCATGCAATTGATTCCCTACATAATTCTAAGAGCGGAGGAGCTGCTTTACTTGGTGTTTGTCGAGGAAAGGTTTCTGAAGGAATTGATTTCTCTGATGATAATGCCAGAGTAGTTATTATTGTTGGTATTCCATTTCCCAATATAAATGATATTCAAGTTGCActgaagaagaaatataatgaCACCTACAAATCATCCAAAAATCTATTGAGTGGTAATGAGTGGTACTGCCACCAAGCATTCCGAGCTTTAAATCAAGCAGCAGGGCGCTGTATTCGTCATAAACTTGATTATGGAGCAATCATCCTATTGGATGAACGTTTTtgggaagaaagaaatagggcATTCATTTCAAAGTGGCTAAGAAGACCGTTGAAGGTGTATGACAGCTTTGATTTGTCATtggagggactaaaatcatTCTTTGTGGATGCCAAGGAACATTATGGCATAAATACAGTGCATGCCACGCAGAATTTGGGTTTAAATGGTGATGATGTCCAAAACAAGGATTGGAATGCAAGGttcacaataaagaaaaataagaaactgAACAAGTCTGGTAATGTAGATGGGAGAGAAACATCAATGATTGAGAATAACATCTCTTTTCCCACACTAACCTCTCAAGATCTTGTTGAGAGTCAGCCATCAGCTCAAAAGAATAGTAACacatacaaatgtaaatatCGCCCACAATGCTGTAATCAGACAGAACCAAGGTTCACTGGGGAATCATCTGTGGCAATCGTACATGAAGAAACTTCCATTGTCAAGGAAACCCCTTGTATAGATGTTGGTAATGATCCCAGTAGCCCTGATTACTCTATGGATGATAACTCTGATTCCACCATAATTGAGGCCTCAGCTCAATTTTGTAATCACTTATCAAGTCTTTCAATGTCTTTAACTAATGGAAGTAAAAATTCTTCAAGGGCCCAGTCTTCAATAACAATTACTCCTAAAAAGAATGTAATTACGAATGATATTCCAGAAATGGAATCATCTTTGAGTTTAAGTGTTAATTCTCACAATCATAAAAGGAGAAAGCCCATGGTCACTCCGTTTATAAACctcattgaagaagaaaattctattgCACCTTGTGCCAGTCCTCTTACATGGTACACAAAAAGCTCTGTAGATTTTAGAGAGATAACTCATGGAAGTGAATATAGTTGTGAGAGAATTTTGAAGTCAAATTCTCCTCCATTACTGACAAGCAATATACCTGGTTCATGTTCACCAACTGTCCCTCCGCTGGACCAAAGGTTACAGATATTTTGTTTGCTCTGCAAAAGTCCATTGGGCCGACCTGAGAATCATCTATATCTTACATGCTCGTTGATTTCATCATCAAAAGTTCATTTAAGATCCCTTTTGAAACAGAGGCTGAAAACTTACACTACTGATACTTTAAAGAGTATACCAGTTATTATTACTGATTCTTTATTTGTTGATCAACGAATTTGCAATAGAATACCCAAGAGTGCACCAGAACAGGGTATTTGGTGTCCCGAAGATGGGTGTGTCTTCAGCACTATTTTCTGTCCCTTCTGCAGTAATATCAACAATTTGCTAGGGGTTCAGGTCATGGCTACTGATTCATCAAATGTTCAGTTACTTGACAAGATATTGTTTTACTTTGATTCTTTGGAAGTGAAGAGCAGTGAGGAATCAGGGAACATTGCTTCAGGGGAAGGGGATCTGTTGCCAGTTAATGACTCTCGTGTGGATAAAATTGCTGTCTTAAATTCTATTGAGAAATATTCTTATCTTCCCCAAACAGGGAATTCAGAAGTCTGGAAGACTAGAAAATCTAAGGAttaa 3711 0.3859 MVSATNPNPKNVYHIGGLQVEFPYQPYGSQFAFMGRVISTLNRAQREGHCHALLESPTGTGKSLSLLCSSLAWQHHYKSKQHHLKPAPEATTDPLAYGGGFVPEELSLSSASENLDRTQSEVNNKKQKKKEAPTIYYASRTHSQISQVIRELRKTAYRVPMAVLASRKHYCTNKNIVGKENLDEECKLLLKDQATGCPEFKNAHKVKGHPSLQKGGCNEVHDIEDLVKVGQVVKGCSYYAARSMSDDAQLVFCPYSYIINPVIRAAMDVDIKEAIVILDEAHNIEDIARDAGSVDIDEDVLDKLQMELQQLCSINAAIYQPLYEMAQGLASWMEQKKNKLEKRDFQHYVSCWTGDKALRELEEANISKQCFPILLECATKAIKIATDLETDAQHLSGMSVITLEGLFSSLTYFFSRNGSHMLDYQLALQRCVRKETGRAFGNWTYTLSLWCLNPAVVFRDVADLSLSVILTSGTLSPMASFSSELGVHFETSLEAPHVIDVDSQVWPAIISTGPGNYPLNASYKTADGYAFQDAVGKSLEEIFKIVPGGCLVFFPSYKLMEKLCNRWSETGQWSRLNVEKSLFVEPRGGSQDDFELALKGYYDSIHHGKRPALGRKRRIKKIDLNHVHAIDSLHNSKSGGAALLGVCRGKVSEGIDFSDDNARVVIIVGIPFPNINDIQVALKKKYNDTYKSSKNLLSGNEWYCHQAFRALNQAAGRCIRHKLDYGAIILLDERFWEERNRAFISKWLRRPLKVYDSFDLSLEGLKSFFVDAKEHYGINTVHATQNLGLNGDDVQNKDWNARFTIKKNKKLNKSGNVDGRETSMIENNISFPTLTSQDLVESQPSAQKNSNTYKCKYRPQCCNQTEPRFTGESSVAIVHEETSIVKETPCIDVGNDPSSPDYSMDDNSDSTIIEASAQFCNHLSSLSMSLTNGSKNSSRAQSSITITPKKNVITNDIPEMESSLSLSVNSHNHKRRKPMVTPFINLIEEENSIAPCASPLTWYTKSSVDFREITHGSEYSCERILKSNSPPLLTSNIPGSCSPTVPPLDQRLQIFCLLCKSPLGRPENHLYLTCSLISSSKVHLRSLLKQRLKTYTTDTLKSIPVIITDSLFVDQRICNRIPKSAPEQGIWCPEDGCVFSTIFCPFCSNINNLLGVQVMATDSSNVQLLDKILFYFDSLEVKSSEESGNIASGEGDLLPVNDSRVDKIAVLNSIEKYSYLPQTGNSEVWKTRKSKD 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0007 1236 PANTHER FANCONI ANEMIA GROUP J PROTEIN 8 1119 - -
Ssu5g0007 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 731 IPR027417 -
Ssu5g0007 1236 CDD SF2_C_XPD 503 735 - -
Ssu5g0007 1236 Pfam Helicase C-terminal domain 539 749 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Ssu5g0007 1236 Gene3D - 516 760 IPR027417 -
Ssu5g0007 1236 MobiDBLite consensus disorder prediction 110 130 - -
Ssu5g0007 1236 Pfam DEAD_2 137 300 IPR010614 GO:0003677|GO:0003678|GO:0005524
Ssu5g0007 1236 SMART Cxpdneu3 557 737 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Ssu5g0007 1236 Coils Coil 108 128 - -
Ssu5g0007 1236 Gene3D - 26 340 IPR027417 -
Ssu5g0007 1236 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 16 351 IPR014013 GO:0005524
Ssu5g0007 1236 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 8 1119 IPR045028 -
Ssu5g0007 1236 SMART deadxpd 18 316 IPR006554 GO:0003678|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0007 Ssu-Chr5 112089 128028 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0007 5 112089 128028 Ssu5g0007 5 112089 128028 ECH