Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3264 ATGCAAGACCCGACAGCACTCCAAGGCGTGAAGCCCCCCCAGTTTCCCGAACAAGAACAACTCAAGTGCCCACGTTGCGACTCCGCGAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCGCAGCCGCGCCATTTTTGCAAGAACTGCAGAAGGTACTGGACAAAAGGTGGCACTTTGAGGAACATCCCGGTTGGGGGTGGGAGCAGAAAGAGCACAAAGCGTTCATCAACCTCCAAGCGCTCTTCCGCACAATCTTCCTCTTTACCTCCGGAGGCTGACCCGACCCGGCTCTGTGCCAACCCGGTTGTTGACCAAGACCAAAGGGTGCTCAGCTTTGGTGGGAGCTTCGGTTCCCTCTTGGCTTCATCTGGGCACTTTGGGACCCTCTTGGAGGGTCTGAATCCAACTGGGTCAGGTTTAAAAGTGGTGCAAATGGGTGAATTTGGGGAGGGGGTTAGTTCTGACCCGGCTTTGAATTCGGATTCGGGTTCAAACCCGGGGTTGCAGGTTCAGAGTAATAGGAGTTCGGAGGGCTTTTTGGGTATGCAAAATGGTGATTCAAGCTGTTGGAATGGTAGTCATGGTTGGTCTGATCTTGCAATGTACACACCTGGCCCTAGTTTTCAATAG 636 0.5283 MQDPTALQGVKPPQFPEQEQLKCPRCDSANTKFCYYNNYNLSQPRHFCKNCRRYWTKGGTLRNIPVGGGSRKSTKRSSTSKRSSAQSSSLPPEADPTRLCANPVVDQDQRVLSFGGSFGSLLASSGHFGTLLEGLNPTGSGLKVVQMGEFGEGVSSDPALNSDSGSNPGLQVQSNRSSEGFLGMQNGDSSCWNGSHGWSDLAMYTPGPSFQ 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3264 211 MobiDBLite consensus disorder prediction 62 99 - -
Ssu4g3264 211 MobiDBLite consensus disorder prediction 1 20 - -
Ssu4g3264 211 MobiDBLite consensus disorder prediction 157 175 - -
Ssu4g3264 211 Pfam Dof domain, zinc finger 19 75 IPR003851 GO:0003677|GO:0006355
Ssu4g3264 211 ProSiteProfiles Zinc finger Dof-type profile. 21 75 IPR003851 GO:0003677|GO:0006355
Ssu4g3264 211 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 3 211 IPR045174 GO:0003700|GO:0006355
Ssu4g3264 211 MobiDBLite consensus disorder prediction 70 93 - -
Ssu4g3264 211 MobiDBLite consensus disorder prediction 153 175 - -
Ssu4g3264 211 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 3 211 - -
Ssu4g3264 211 ProSitePatterns Zinc finger Dof-type signature. 23 59 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3264 Ssu-Chr4 82274303 82274938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3264 13 132 C2C2-Dof Transcription Factor Family AT1G51700 55.714 4.10e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu4g3264 zf-Dof 2.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3264 - - gmx:100790822 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3264 4 82274303 82274938 Ssu4g3264 4 82274303 82274938 ECH
Ssu8g0280 8 4804208 4804858 Ssu4g3264 4 82274303 82274938 PCT