Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2976 ATGGAGGGGATGGATCCCAATTCATGTGCAAGGCCAGTTTTAGAGAAGAAAGCAAGGCCACAAGAGCAACTGAATTGTCCAAGGTGCAATTCAACCAACACAAAGTTCTGTTATTACAACAACTACAGCCTCACACAACCCAGATACTTCTGCAAAACTTGTAGAAGGTATTGGACAGAAGGAGGGTCTCTGAGAAACGTTCCAGTTGGAGGTGGTTCAAGAAAGAACAAGAAGGTCACTTCAGCAGCAGccacatcttcatcatcatcatcaaaggTTCCAGACCTAAACCCACCAAGCCTCTCAGTCTCAGTCTCAGCTATCTCTTCCCAAAACCCTAAAATAATGCATGGAGGCCAAGATCTCAACCTGGCTTTCCCAGCTATGGACAAGTACCATCATGGCATGTCCCCTTATGTTGAGATGCAGAACTGTGACACCACTCATCATCACCAAACCTCTTCTTCTTGTTCTGCTCCTCCAACTTCTCTTTCAGCTCTAGAGCTACTAAGGTCCAGCATGGCATCTAGGGGTTTGAACCCTTATGCTCCTTCTTCCTTGATGCCAAACTCAACAAATAACAATGCCCTTTACCCATCAGGGTTTCCCATGCAAGAAGTTAAACCAAGCCTTAGCTTTTCTTCAGTTGATGGGATGGGGAATAGATCATATGATCAGGTCCAGGAGAGGGGTAGTGGCAGAGTTTTGTTCCCTTTTGGAGATGTCAAGCAGCTTTCTACTGCAGGAACTGAAGTGGAACACAATAAAGAACAAGGGAACTCAACTGGATATTGGAGTGGAATGATTGGTGAAGGGACAtggtaa 825 0.4364 MEGMDPNSCARPVLEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVTSAAATSSSSSSKVPDLNPPSLSVSVSAISSQNPKIMHGGQDLNLAFPAMDKYHHGMSPYVEMQNCDTTHHHQTSSSCSAPPTSLSALELLRSSMASRGLNPYAPSSLMPNSTNNNALYPSGFPMQEVKPSLSFSSVDGMGNRSYDQVQERGSGRVLFPFGDVKQLSTAGTEVEHNKEQGNSTGYWSGMIGEGTW 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2976 274 MobiDBLite consensus disorder prediction 78 99 - -
Ssu4g2976 274 MobiDBLite consensus disorder prediction 65 99 - -
Ssu4g2976 274 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Ssu4g2976 274 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Ssu4g2976 274 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Ssu4g2976 274 PANTHER DOF ZINC FINGER PROTEIN DOF3.7 7 269 - -
Ssu4g2976 274 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 269 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2976 Ssu-Chr4 76090335 76091159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2976 16 274 C2C2-Dof Transcription Factor Family AT3G61850 50.534 2.94e-71 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu4g2976 zf-Dof 3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2976 - - gmx:778110 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2976 4 76090335 76091159 Ssu4g2976 4 76090335 76091159 ECH
Ssu4g2976 4 76090335 76091159 Ssu4g0108 4 1733388 1734771 ECH
Ssu4g0108 4 1733388 1734771 Ssu4g2976 4 76090335 76091159 PCT